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Jerry M. Parks
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The genetic basis for bacterial mercury methylation
JM Parks, A Johs, M Podar, R Bridou, RA Hurt Jr, SD Smith, ...
Science 339 (6125), 1332-1335, 2013
9592013
Targeted isolation and cultivation of uncultivated bacteria by reverse genomics
KL Cross, JH Campbell, M Balachandran, AG Campbell, CJ Cooper, ...
Nature Biotechnology 37, 1314–1321, 2019
2722019
Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum
SD Brown, AM Guss, TV Karpinets, JM Parks, N Smolin, S Yang, ML Land, ...
Proceedings of the National Academy of Sciences 108 (33), 13752-13757, 2011
2082011
Supercomputer-based ensemble docking drug discovery pipeline with application to Covid-19
A Acharya, R Agarwal, MB Baker, J Baudry, D Bhowmik, S Boehm, ...
Journal of Chemical Information and Modeling, 2020
1562020
AF2Complex predicts direct physical interactions in multimeric proteins with deep learning
M Gao, D Nakajima An, JM Parks, J Skolnick
Nature Communications 13 (1), 1744, 2022
1532022
Quantum mechanics/molecular mechanics minimum free-energy path for accurate reaction energetics in solution and enzymes: Sequential sampling and optimization on the potential …
H Hu, Z Lu, JM Parks, SK Burger, W Yang
Journal of Chemical Physics 128, 034105, 2008
1312008
How to discover antiviral drugs quickly
JM Parks, JC Smith
New England Journal of Medicine 382 (23), 2261-2264, 2020
1152020
Reviving antibiotics: efflux pump inhibitors that interact with AcrA, a membrane fusion protein of the AcrAB-TolC multidrug efflux pump
N Abdali, JM Parks, KM Haynes, JL Chaney, AT Green, D Wolloscheck, ...
ACS Infectious Diseases 3 (1), 89-98, 2017
1082017
Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog
TJ Tschaplinski, RF Standaert, NL Engle, MZ Martin, AK Sangha, ...
Biotechnology for Biofuels 5, 71, 2012
1062012
Radical Coupling Reactions in Lignin Synthesis: A Density Functional Theory Study
AK Sangha, JM Parks, RF Standaert, A Ziebell, M Davis, JC Smith
Journal of Physical Chemistry B 116, 4760-4768, 2012
1052012
Plant Cell Walls: Basics of Structure, Chemistry, Accessibility and the Influence on Conversion
BH Davison, JM Parks, MF Davis, BS Donohoe
Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion …, 2013
1032013
Mechanism of Hg−C Protonolysis in the Organomercurial Lyase MerB
JM Parks, H Guo, C Momany, L Liang, SM Miller, AO Summers, JC Smith
Journal of the American Chemical Society 131 (37), 13278-13285, 2009
872009
Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation
SD Smith, R Bridou, A Johs, JM Parks, DA Elias, RA Hurt, SD Brown, ...
Applied and Environmental Microbiology 81 (9), 3205-3217, 2015
832015
Distribution of mechanical stress in the Escherichia coli cell envelope
H Hwang, N Paracini, JM Parks, JH Lakey, JC Gumbart
Biochimica et Biophysica Acta (BBA)-Biomembranes 1860 (12), 2566-2575, 2018
752018
Molecular simulation as a tool for studying lignin
AK Sangha, L Petridis, JC Smith, A Ziebell, JM Parks
Environmental Progress & Sustainable Energy 31 (1), 47-54, 2012
732012
Why mercury prefers soft ligands
D Riccardi, HB Guo, JM Parks, B Gu, AO Summers, SM Miller, L Liang, ...
The Journal of Physical Chemistry Letters 4 (14), 2317-2322, 2013
682013
Quantum Chemical Calculation of pKas of Environmentally Relevant Functional Groups: Carboxylic Acids, Amines and Thiols in Aqueous Solution
P Lian, RC Johnston, JM Parks, JC Smith
Journal of Physical Chemistry A 122 (17), 4366–4374, 2018
672018
Benchmark Interaction Energies for Biologically Relevant Noncovalent Complexes Containing Divalent Sulfur
BJ Mintz, JM Parks
Journal of Physical Chemistry A 116 (3), 1086-1092, 2012
652012
Chemical Factors that Control Lignin Polymerization
AK Sangha, BH Davison, RF Standaert, MF Davis, JC Smith, JM Parks
The Journal of Physical Chemistry B 118 (1), 164-170, 2014
622014
Molecular Properties that Define the Activities of Antibiotics in Escherichia coli and Pseudomonas aeruginosa
CJ Cooper, G Krishnamoorthy, D Wolloscheck, JK Walker, VV Rybenkov, ...
ACS Infectious Diseases 4 (8), 1223–1234, 2018
602018
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