Stebėti
Lee, Juyong
Pavadinimas
Cituota
Cituota
Metai
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
2412019
Constant pH molecular dynamics in explicit solvent with enveloping distribution sampling and Hamiltonian exchange
J Lee, BT Miller, A Damjanovic, BR Brooks
Journal of Chemical Theory and Computation 10 (7), 2738–2750, 2014
812014
AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks
Y Kwon, WH Shin, J Ko, J Lee
International journal of molecular sciences 21 (22), 8424, 2020
802020
Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms
B Manavalan, J Lee, J Lee
PloS one 9 (9), e106542, 2014
802014
Modularity optimization by conformational space annealing
J Lee, SP Gross, J Lee
Physical Review E 85 (5), 056702, 2012
742012
De novo protein structure prediction by dynamic fragment assembly and conformational space annealing
J Lee, J Lee, TN Sasaki, M Sasai, C Seok, J Lee
Proteins: Structure, Function, and Bioinformatics 79 (8), 2403-2417, 2011
612011
Can AlphaFold2 predict protein-peptide complex structures accurately?
J Ko, J Lee
BioRxiv, 2021.07. 27.453972, 2021
552021
LigDockCSA: Protein–ligand docking using conformational space annealing
WH Shin, L Heo, J Lee, J Ko, C Seok, J Lee
Journal of Computational Chemistry 32 (15), 3226–3232, 2011
522011
What stabilizes close arginine pairing in proteins?
D Lee, J Lee, C Seok
Phys. Chem. Chem. Phys. 15, 5844-5853, 2013
492013
Retrosynthetic reaction pathway prediction through neural machine translation of atomic environments
UV Ucak, I Ashyrmamatov, J Ko, J Lee
Nature communications 13 (1), 1186, 2022
482022
A statistical rescoring scheme for protein–ligand docking: Consideration of entropic effect
J Lee, C Seok
Proteins: Structure, Function, and Bioinformatics 70 (3), 1074-1083, 2008
452008
Improved network community structure improves function prediction
J Lee, SP Gross, J Lee
Scientific Reports 3, 02197, 2013
442013
Protein structure modeling for CASP10 by multiple layers of global optimization
K Joo, J Lee, S Sim, SY Lee, K Lee, S Heo, IH Lee, SJ Lee, J Lee
Proteins: Structure, Function, and Bioinformatics 82, 188-195, 2014
422014
Computational scheme for pH‐dependent binding free energy calculation with explicit solvent
J Lee, BT Miller, BR Brooks
Protein Science 25 (1), 231-243, 2016
412016
Cooperativity and Specificity of Cys2His2 Zinc Finger Protein−DNA Interactions: A Molecular Dynamics Simulation Study
J Lee, JS Kim, C Seok
The Journal of Physical Chemistry B 114 (22), 7662-7671, 2010
412010
Prediction of molecular electronic transitions using random forests
B Kang, C Seok, J Lee
Journal of Chemical Information and Modeling 60 (12), 5984-5994, 2020
402020
MolFinder: an evolutionary algorithm for the global optimization of molecular properties and the extensive exploration of chemical space using SMILES
Y Kwon, J Lee
Journal of cheminformatics 13 (1), 24, 2021
392021
Template based protein structure modeling by global optimization in CASP 11
K Joo, IS Joung, SY Lee, JY Kim, Q Cheng, B Manavalan, JY Joung, ...
Proteins: Structure, Function, and Bioinformatics 84, 221-232, 2016
382016
Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction
J Lee, J Lee
PLoS ONE 8 (4), e60372, 2013
382013
Transition between B-DNA and Z-DNA: Free Energy Landscape for the B− Z Junction Propagation
J Lee, YG Kim, KK Kim, C Seok
The Journal of Physical Chemistry B 114 (30), 9872-9881, 2010
382010
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Straipsniai 1–20