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John S. Schreck
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Introducing improved structural properties and salt dependence into a coarse-grained model of DNA
BEK Snodin, F Randisi, M Mosayebi, P Šulc, JS Schreck, F Romano, ...
The Journal of chemical physics 142 (23), 2015
3312015
Coarse-graining DNA for simulations of DNA nanotechnology
JPK Doye, TE Ouldridge, AA Louis, F Romano, P Šulc, C Matek, ...
Physical Chemistry Chemical Physics 15 (47), 20395-20414, 2013
2252013
Learning retrosynthetic planning through simulated experience
JS Schreck, CW Coley, KJM Bishop
ACS central science 5 (6), 970-981, 2019
1662019
Coarse-grained modelling of the structural properties of DNA origami
BEK Snodin, JS Schreck, F Romano, AA Louis, JPK Doye
Nucleic acids research 47 (3), 1585-1597, 2019
862019
DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization
JS Schreck, TE Ouldridge, F Romano, P Šulc, LP Shaw, AA Louis, ...
Nucleic acids research 43 (13), 6181-6190, 2015
712015
A kinetic study of amyloid formation: fibril growth and length distributions
JS Schreck, JM Yuan
The Journal of Physical Chemistry B 117 (21), 6574-6583, 2013
702013
Design principles for rapid folding of knotted DNA nanostructures
V Kočar, JS Schreck, S Čeru, H Gradišar, N Bašić, T Pisanski, JPK Doye, ...
Nature communications 7 (1), 10803, 2016
602016
Characterizing the motion of jointed DNA nanostructures using a coarse-grained model
R Sharma, JS Schreck, F Romano, AA Louis, JPK Doye
ACS nano 11 (12), 12426-12435, 2017
592017
Characterizing DNA star-tile-based nanostructures using a coarse-grained model
JS Schreck, F Romano, MH Zimmer, AA Louis, JPK Doye
ACS nano 10 (4), 4236-4247, 2016
412016
DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size
DC Khara, JS Schreck, TE Tomov, Y Berger, TE Ouldridge, JPK Doye, ...
Nucleic acids research 46 (3), 1553-1561, 2018
392018
Self-assembly of two-dimensional binary quasicrystals: A possible route to a DNA quasicrystal
A Reinhardt, JS Schreck, F Romano, JPK Doye
Journal of Physics: Condensed Matter 29 (1), 014006, 2016
322016
Architectural energetics for tumuli construction: The case of the medieval Chungul Kurgan on the Eurasian steppe
Jordan Pickett, John S. Schreck, Renata Holod, Yuriy Rassamakin, Oleksandr ...
Journal of Archaeological Science 75, 101-114, 2016
282016
Understanding DNA interactions in crowded environments with a coarse-grained model
F Hong, JS Schreck, P Šulc
Nucleic acids research 48 (19), 10726-10738, 2020
252020
Characterizing the bending and flexibility induced by bulges in DNA duplexes
JS Schreck, TE Ouldridge, F Romano, AA Louis, JPK Doye
The Journal of chemical physics 142 (16), 2015
242015
Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection
A Di Gioacchino, J Procyk, M Molari, JS Schreck, Y Zhou, Y Liu, ...
PLoS computational biology 18 (9), e1010561, 2022
232022
Investigating the effects of molecular crowding on the kinetics of protein aggregation
JS Schreck, J Bridstrup, JM Yuan
The Journal of Physical Chemistry B 124 (44), 9829-9839, 2020
222020
The oxDNA coarse-grained model as a tool to simulate DNA origami
JPK Doye, H Fowler, D Prešern, J Bohlin, L Rovigatti, F Romano, P Šulc, ...
DNA and RNA Origami: Methods and Protocols, 93-112, 2023
212023
Exactly solvable model for helix-coil-sheet transitions in protein systems
JS Schreck, JM Yuan
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 81 (6 …, 2010
212010
Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly
P Fonseca, F Romano, JS Schreck, TE Ouldridge, JPK Doye, AA Louis
The Journal of Chemical Physics 148 (13), 2018
192018
Machine learning for improving surface-layer-flux estimates
T McCandless, DJ Gagne, B Kosović, SE Haupt, B Yang, C Becker, ...
Boundary-Layer Meteorology 185 (2), 199-228, 2022
172022
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