Bruno Contreras-Moreira

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Pablo VinuesaProfessor of Environmental and Evolutionary Microbiology, Center for Genomic Sciences - UNAM, MexicoPatvirtintas el. paštas ccg.unam.mx
Ana Maria CasasGenetics and Plant Production Department, Estación Experimental de Aula Dei (EEAD-CSIC)Patvirtintas el. paštas eead.csic.es
Ernesto IgartuaCSICPatvirtintas el. paštas eead.csic.es
Carlos P CantalapiedraCentro de Biotecnología y Genómica de Plantas - UPM-INIAPatvirtintas el. paštas inia.csic.es
Jacques van HeldenAix-Marseille UniversitéPatvirtintas el. paštas univ-amu.fr
Paul A BatesThe Francis Crick InstitutePatvirtintas el. paštas crick.ac.uk
Julio Collado-VidesProfessor of Computational Genomics, CCG, UNAMPatvirtintas el. paštas ccg.unam.mx
Alvaro SebastianBioinformaticianPatvirtintas el. paštas amu.edu.pl
Rubén SanchoEstación Experimental de Aula Dei-CSICPatvirtintas el. paštas unizar.es
najla ksouriEstación Experimental Aula Dei EEAD-CSICPatvirtintas el. paštas eead.csic.es
Pilar CatalanUniversidad de ZaragozaPatvirtintas el. paštas unizar.es
Inmaculada Yruela (ORCID: 0000-000...Estación Experimental de Aula Dei, National Spanish Research Council (CSIC)Patvirtintas el. paštas eead.csic.es
Vladimir Espinosa AngaricaSenior Research Fellow at DUKE-NUS Medical School, National University of SingaporePatvirtintas el. paštas duke-nus.edu.sg
Sean Patrick GordonGuardant HealthPatvirtintas el. paštas lbl.gov
John P VogelDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Y GogorcenaGenomics of fruit trees and grapevines Lab. Pomology Department, EEAD-CSIC, Zaragoza (Spain)Patvirtintas el. paštas eead.csic.es
Christian DubosResearcher (INRA - BPMP Montpellier)Patvirtintas el. paštas supagro.inra.fr
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Patvirtintas el. paštas bsc.es
Reinhard HehlInstitut für Genetik, Technische Universität BraunschweigPatvirtintas el. paštas tu-bs.de

Stebėti

Bruno Contreras-Moreira

Spanish National Research Council, Estación Experimental de Aula Dei

Patvirtintas el. paštas eead.csic.es - Pagrindinis puslapis

genomics plant breeding regulation structural bioinformatics


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis B Contreras-Moreira, P Vinuesa Applied and environmental microbiology 79 (24), 7696-7701, 2013	863	2013
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008	627	2008
Ensembl Genomes 2020—enabling non-vertebrate genomic research KL Howe, B Contreras-Moreira, N De Silva, G Maslen, W Akanni, J Allen, ... Nucleic acids research 48 (D1), D689-D695, 2020	455	2020
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure SP Gordon, B Contreras-Moreira, DP Woods, DL Des Marais, D Burgess, ... Nature communications 8 (1), 2184, 2017	317	2017
Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli A Mendoza-Vargas, L Olvera, M Olvera, R Grande, L Vega-Alvarado, ... PloS one 4 (10), e7526, 2009	310	2009
RSAT 2015: regulatory sequence analysis tools A Medina-Rivera, M Defrance, O Sand, C Herrmann, ... Nucleic acids research 43 (W1), W50-W56, 2015	282	2015
OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer GC Sellar, KP Watt, GJ Rabiasz, EA Stronach, L Li, EP Miller, CE Massie, ... Nature genetics 34 (3), 337-343, 2003	239	2003
Domain fishing: a first step in protein comparative modelling B Contreras-Moreira, PA Bates Bioinformatics 18 (8), 1141-1142, 2002	217	2002
Multilocus Sequence Analysis for Assessment of the Biogeography and Evolutionary Genetics of Four Bradyrhizobium Species That Nodulate Soybeans on the … P Vinuesa, K Rojas-Jiménez, B Contreras-Moreira, SK Mahna, BN Prasad, ... Applied and environmental microbiology 74 (22), 6987-6996, 2008	211	2008
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates AD Yates, J Allen, RM Amode, AG Azov, M Barba, A Becerra, J Bhai, ... Nucleic acids research 50 (D1), D996-D1003, 2022	210	2022
RSAT 2018: regulatory sequence analysis tools 20th anniversary NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ... Nucleic acids research 46 (W1), W209-W214, 2018	204	2018
GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision … P Vinuesa, LE Ochoa-Sánchez, B Contreras-Moreira Frontiers in microbiology 9, 771, 2018	136	2018
BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley CP Cantalapiedra, R Boudiar, AM Casas, E Igartua, B Contreras-Moreira Molecular breeding 35, 1-11, 2015	110	2015
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research MK Tello-Ruiz, S Naithani, P Gupta, A Olson, S Wei, J Preece, Y Jiao, ... Nucleic Acids Research 49 (D1), D1452-D1463, 2021	102	2021
A roadmap for gene functional characterisation in crops with large genomes: lessons from polyploid wheat NM Adamski, P Borrill, J Brinton, SA Harrington, C Marchal, AR Bentley, ... Elife 9, e55646, 2020	100	2020
OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors TS Serra, DD Figueiredo, AM Cordeiro, DM Almeida, T Lourenço, ... Plant Molecular Biology 82, 439-455, 2013	91	2013
Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes R Sancho, CP Cantalapiedra, D López‐Alvarez, SP Gordon, JP Vogel, ... New Phytologist 218 (4), 1631-1644, 2018	90	2018
Analysis of plant pan-genomes and transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of the same species B Contreras-Moreira, CP Cantalapiedra, MJ García-Pereira, SP Gordon, ... Frontiers in plant science 8, 184, 2017	90	2017
3D-footprint: a database for the structural analysis of protein–DNA complexes B Contreras-Moreira Nucleic Acids Research 38 (suppl_1), D91-D97, 2010	88	2010
footprintDB: a database of transcription factors with annotated cis elements and binding interfaces A Sebastian, B Contreras-Moreira Bioinformatics 30 (2), 258-265, 2014	85	2014

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