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Sudhanshu Shanker
Sudhanshu Shanker
Dept of molecular biology, Scripps Research
Verified email at scripps.edu
Title
Cited by
Cited by
Year
Facilitating minima search for large water clusters at the mp2 level via molecular tailoring
JP Furtado, AP Rahalkar, S Shanker, P Bandyopadhyay, SR Gadre
The journal of physical chemistry letters 3 (16), 2253-2258, 2012
792012
Monte Carlo temperature basin paving with effective fragment potential: An efficient and fast method for finding low-energy structures of water clusters (H2O) 20 and (H2O) 25
S Shanker, P Bandyopadhyay
The Journal of Physical Chemistry A 115 (42), 11866-11875, 2011
462011
Predicting Protein–Peptide Interactions: Benchmarking Deep Learning Techniques and a Comparison with Focused Docking
S Shanker, MF Sanner
Journal of Chemical Information and Modeling, 2023
142023
Shotgun scanning glycomutagenesis: a simple and efficient strategy for constructing and characterizing neoglycoproteins
M Li, X Zheng, S Shanker, T Jaroentomeechai, TD Moeller, SW Hulbert, ...
Proceedings of the National Academy of Sciences 118 (39), 2021
102021
How Mg2+ ion and water network affect the stability and structure of non-Watson–Crick base pairs in E. coli loop E of 5S rRNA: a molecular dynamics and …
S Shanker, P Bandyopadhyay
Journal of Biomolecular Structure and Dynamics 35 (10), 2103-2122, 2017
92017
Structure-based neural network protein–carbohydrate interaction predictions at the residue level
SW Canner, S Shanker, JJ Gray
Frontiers in Bioinformatics 3, 1186531, 2023
72023
Self-Assembly of Nanocubic Molecular Capsules via Solvent-Guided Formation of Rectangular Blocks
T Yamamoto, H Arefi, S Shanker, H Sato, S Hiraoka
The journal of physical chemistry letters 9 (20), 6082-6088, 2018
72018
Hidden markov model for the prediction of transmembrane proteins using MATLAB
N Chaturvedi, S Shanker, VK Singh, D Sinha, PN Pandey
Bioinformation 7 (8), 418, 2011
52011
Determination of low-energy structures of a small RNA hairpin using Monte Carlo–based techniques
S Shanker, P Bandyopadhyay
Journal of biosciences 37, 533-538, 2012
22012
A combination of Monte Carlo Temperature Basin Paving and Graph theory: Water cluster low energy structures and completeness of search
R SHRIVASTAVA, A RAKSHIT, S SHANKER, L VIG, ...
Journal of Chemical Sciences, 1-10, 2016
12016
Geometric and energy calculations to predict protein stability and activity changes due to site-specific glycosylation
S Shanker, M Liang, X Zheng, JW Labonte, MP DeLisa, JJ Gray1
Glycobiology, cwaa094, 88, 2020
2020
Fine-mapping the consequences of site-specific glycan installation by shotgun scanning glycomutagenesis
M Li, X Zheng, S Shanker, T Jaroentomeechai, I Kocer, J Byrne, EC Cox, ...
bioRxiv, 2020
2020
88 Interplay of water molecules and Mg2+ ions in stability of RNA containing non-Watson–Crick base pairs
S Shanker, P Bandyopadhyay
Journal of Biomolecular Structure and Dynamics 33 (sup1), 57-58, 2015
2015
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