Kliment Olechnovic

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Česlovas VenclovasInstitute of Biotechnology, Life Sciences Center, Vilnius UniversityVerified email at bti.vu.lt
Justas DapkūnasInstitute of Biotechnology, Life Sciences Center, Vilnius UniversityVerified email at bti.vu.lt
Andriy KryshtafovychUniversity of California, DavisVerified email at ucdavis.edu
Albertas TiminskasVilnius University, Institute of BiotechnologyVerified email at bti.vu.lt
Björn WallnerProfessorVerified email at liu.se
Torsten SchwedeUniversity of Basel, Biozentrum & SIB Swiss Institute of BioinformaticsVerified email at unibas.ch
David Menéndez HurtadoSavantic AB. Former: Department of Biochemistry and Biophysics, Stockholm UniversityVerified email at scilifelab.se
Liam McGuffinProfessor of Bioinformatics, University of ReadingVerified email at reading.ac.uk
Jianlin ChengCurators' Distinguished Professor, University of MissouriVerified email at missouri.edu
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se
Sergei GrudininLJK CNRS / Univ. Grenoble Alpes, Grenoble, FranceVerified email at univ-grenoble-alpes.fr
Maria KadukovaPhD student, Moscow Institute of Physics and Technology; Grenoble Alps UniversityVerified email at phystech.edu
Chaok SeokSeoul National UniversityVerified email at snu.ac.kr
Dennis Della CorteAssociate Professor of Physics, Brigham Young UniversityVerified email at byu.edu
John MoultUniversity of MarylandVerified email at tunc.org
Jonghun WonGalux Inc.Verified email at galux.co.kr
Wendy BillingsPhD Candidate, University of California BerkeleyVerified email at berkeley.edu
Visvaldas KairysVilnius UniversityVerified email at bti.vu.lt
Vytautas RaškevičiusResearcher, Lithuanian University of Health SciencesVerified email at lsmu.lt

Kliment Olechnovic

CNRS Laboratoire Jean Kuntzmann (on sabbatical leave from Vilnius University Life Sciences Center)

Verified email at ibt.lt - Homepage

bioinformatics protein structure machine learning Voronoi diagram


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VoroMQA: Assessment of protein structure quality using interatomic contact areas K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 85 (6), 1131-1145, 2017	188	2017
CAD‐score: a new contact area difference‐based function for evaluation of protein structural models K Olechnovič, E Kulberkytė, Č Venclovas Proteins: Structure, Function, and Bioinformatics 81 (1), 149-162, 2013	148	2013
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019	129	2019
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021	108	2021
Estimation of model accuracy in CASP13 J Cheng, MH Choe, A Elofsson, KS Han, J Hou, AHA Maghrabi, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1361-1377, 2019	98	2019
Voronota: a fast and reliable tool for computing the vertices of the Voronoi diagram of atomic balls K Olechnovič, Č Venclovas Journal of computational chemistry 35 (8), 672-681, 2014	86	2014
The PPI3D web server for searching, analyzing and modeling protein–protein interactions in the context of 3D structures J Dapkūnas, A Timinskas, K Olechnovič, M Margelevičius, R Dičiūnas, ... Bioinformatics 33 (6), 935-937, 2017	61	2017
Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023	48	2023
Comparative analysis of methods for evaluation of protein models against native structures K Olechnovič, B Monastyrskyy, A Kryshtafovych, Č Venclovas Bioinformatics 35 (6), 937-944, 2019	45	2019
VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes K Olechnovič, Č Venclovas Nucleic acids research 47 (W1), W437-W442, 2019	44	2019
VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures I Igashov, K Olechnovič, M Kadukova, Č Venclovas, S Grudinin Bioinformatics 37 (16), 2332-2339, 2021	35	2021
Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure K Olechnovič, M Margelevičius, Č Venclovas Bioinformatics 27 (5), 723-724, 2011	29	2011
TemStaPro: protein thermostability prediction using sequence representations from protein language models I Pudžiuvelytė, K Olechnovič, E Godliauskaite, K Sermokas, T Urbaitis, ... Bioinformatics 40 (4), btae157, 2024	23	2024
Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment A Kryshtafovych, J Moult, WM Billings, D Della Corte, K Fidelis, S Kwon, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1987-1996, 2021	21	2021
Prediction of protein assemblies by structure sampling followed by interface‐focused scoring K Olechnovič, L Valančauskas, J Dapkūnas, Č Venclovas Proteins: Structure, Function, and Bioinformatics 91 (12), 1724-1733, 2023	18	2023
VoroContacts: a tool for the analysis of interatomic contacts in macromolecular structures K Olechnovič, Č Venclovas Bioinformatics 37 (24), 4873-4875, 2021	18	2021
Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction J Dapkūnas, K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 89 (12), 1834-1843, 2021	17	2021
The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes K Olechnovič, Č Venclovas Nucleic acids research 42 (W1), W259-W263, 2014	17	2014
VoroIF‐GNN: Voronoi tessellation‐derived protein–protein interface assessment using a graph neural network K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 91 (12), 1879-1888, 2023	15	2023
Structural modeling of protein complexes: Current capabilities and challenges J Dapkūnas, K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 87 (12), 1222-1232, 2019	15	2019

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