STAR: ultrafast universal RNA-seq aligner A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ... Bioinformatics 29 (1), 15-21, 2013 | 41477 | 2013 |
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17042 | 2012 |
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6010 | 2007 |
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012 | 5667 | 2012 |
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012 | 5427 | 2012 |
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 4112 | 2005 |
CD127 expression inversely correlates with FoxP3 and suppressive function of human CD4+ T reg cells W Liu, AL Putnam, Z Xu-Yu, GL Szot, MR Lee, S Zhu, PA Gottlieb, ... The Journal of experimental medicine 203 (7), 1701-1711, 2006 | 3539 | 2006 |
High density synthetic oligonucleotide arrays RJ Lipshutz, S Fodor, TR Gingeras, DJ Lockhart Nature genetics 21 (1), 20-24, 1999 | 3428 | 1999 |
RNA maps reveal new RNA classes and a possible function for pervasive transcription P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ... Science 316 (5830), 1484-1488, 2007 | 2965 | 2007 |
The ENCODE (ENCyclopedia of DNA elements) project EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ... Science 306 (5696), 636-640, 2004 | 2425 | 2004 |
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1960 | 2014 |
Genomic maps and comparative analysis of histone modifications in human and mouse BE Bernstein, M Kamal, K Lindblad-Toh, S Bekiranov, DK Bailey, ... Cell 120 (2), 169-181, 2005 | 1887 | 2005 |
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1757 | 2014 |
The developmental transcriptome of Drosophila melanogaster BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ... Nature 471 (7339), 473-479, 2011 | 1700 | 2011 |
Genome-wide analysis of estrogen receptor binding sites JS Carroll, CA Meyer, J Song, W Li, TR Geistlinger, J Eeckhoute, ... Nature genetics 38 (11), 1289-1297, 2006 | 1632 | 2006 |
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution J Cheng, P Kapranov, J Drenkow, S Dike, S Brubaker, S Patel, J Long, ... science 308 (5725), 1149-1154, 2005 | 1552 | 2005 |
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs S Cawley, S Bekiranov, HH Ng, P Kapranov, EA Sekinger, D Kampa, ... Cell 116 (4), 499-509, 2004 | 1437 | 2004 |
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ... Cell 148 (1), 84-98, 2012 | 1364 | 2012 |
Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1353 | 2020 |
Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication. JC Guatelli, KM Whitfield, DY Kwoh, KJ Barringer, DD Richman, ... Proceedings of the National Academy of Sciences 87 (5), 1874-1878, 1990 | 1317 | 1990 |