| Pathway Commons, a web resource for biological pathway data EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ... Nucleic acids research 39 (suppl_1), D685-D690, 2010 | 1306 | 2010 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 815 | 2010 |
| Pathway Commons 2019 Update: integration, analysis and exploration of pathway data I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ... Nucleic acids research 48 (D1), D489-D497, 2020 | 306 | 2020 |
| PSIC: profile extraction from sequence alignments with position-specific counts of independent observations SR Sunyaev, F Eisenhaber, IV Rodchenkov, B Eisenhaber, VG Tumanyan, ... Protein engineering 12 (5), 387-394, 1999 | 277 | 1999 |
| PPI spider: a tool for the interpretation of proteomics data in the context of protein–protein interaction networks AV Antonov, S Dietmann, I Rodchenkov, HW Mewes Proteomics 9 (10), 2740-2749, 2009 | 78 | 2009 |
| Using biological pathway data with paxtools E Demir, Ö Babur, I Rodchenkov, BA Aksoy, KI Fukuda, B Gross, ... PLoS computational biology 9 (9), e1003194, 2013 | 75 | 2013 |
| PPISURV: a novel bioinformatics tool for uncovering the hidden role of specific genes in cancer survival outcome AV Antonov, M Krestyaninova, RA Knight, I Rodchenkov, G Melino, ... Oncogene 33 (13), 1621-1628, 2014 | 74 | 2014 |
| CCancer: a bird’s eye view on gene lists reported in cancer-related studies S Dietmann, W Lee, P Wong, I Rodchenkov, AV Antonov Nucleic acids research 38 (suppl_2), W118-W123, 2010 | 34 | 2010 |
| Pattern search in BioPAX models Ö Babur, BA Aksoy, I Rodchenkov, SO Sümer, C Sander, E Demir Bioinformatics 30 (1), 139-140, 2014 | 28 | 2014 |
| Beyond the ‘best’match: machine learning annotation of protein sequences by integration of different sources of information IV Tetko, IV Rodchenkov, MC Walter, T Rattei, HW Mewes Bioinformatics 24 (5), 621-628, 2008 | 28 | 2008 |
| Science Forum: Author-sourced capture of pathway knowledge in computable form using Biofactoid JV Wong, M Franz, MC Siper, D Fong, F Durupinar, C Dallago, A Luna, ... Elife 10, e68292, 2021 | 17 | 2021 |
| The BioPAX Validator I Rodchenkov, E Demir, C Sander, GD Bader Bioinformatics 29 (20), 2659-2660, 2013 | 15 | 2013 |
| Protein sequence-structure compatibility criteria in terms of statistical hypothesis testing. S Sunyaev, E Kuznetsov, I Rodchenkov, V Tumanyan Protein engineering 10 (6), 635-646, 1997 | 14 | 1997 |
| Babur ü, Anwar N, Schultz N, Bader GD, Sander C EG Cerami, BE Gross, E Demir, I Rodchenkov Nucleic Acids Res 39 (Suppl 1), 685, 2011 | 5 | 2011 |
| Capturing scientific knowledge in computable form JV Wong, M Franz, MC Siper, D Fong, F Durupinar, C Dallago, A Luna, ... bioRxiv, 2021.03. 10.382333, 2021 | 1 | 2021 |
| Pathway Commons: 2019 Update I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ... bioRxiv, 788521, 2019 | | 2019 |
| Interpreting gene lists from-omics experiments A Luna, JV Wong, E Demir, I Rodchenkov, Ö Babur, C Sander, GD Bader Cancer Research 79 (13_Supplement), 3451-3451, 2019 | | 2019 |
| How can you interpret gene lists from-omics experiments JV Wong, A Luna, E Demir, I Rodchenkov, Ö Babur, C Sander, GD Bader Cancer Research 78 (13_Supplement), 1284-1284, 2018 | | 2018 |
| Access and Discover Biological Pathway Information from Pathway Commons. E Demir, I Rodchenkov, O Babur, A Luna, JV Wong, C Sander, G Bader MOLECULAR BIOLOGY OF THE CELL 28, 2017 | | 2017 |
| Erratum: Corrigendum: The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Springer Science+ Business Media, 2012 | | 2012 |
Emek DemirOHSUVerified email at ohsu.edu
