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Agnes Noy
Agnes Noy
Verified email at york.ac.uk - Homepage
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Cited by
Year
Parmbsc1: a refined force field for DNA simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature methods 13 (1), 55-58, 2016
9672016
Theoretical methods for the simulation of nucleic acids
M Orozco, A Pérez, A Noy, FJ Luque
Chemical Society Reviews 32 (6), 350-364, 2003
1892003
The relative flexibility of B-DNA and A-RNA duplexes: database analysis
A Perez, A Noy, F Lankas, FJ Luque, M Orozco
Nucleic acids research 32 (20), 6144-6151, 2004
1562004
Recent advances in the study of nucleic acid flexibility by molecular dynamics
M Orozco, A Noy, A Pérez
Current opinion in structural biology 18 (2), 185-193, 2008
1352008
Hospital A., Walther J., Andrio P., Gońi R., Balaceanu A. et al
I Ivani, PD Dans, A Noy, A Pérez, I Faustino
Parmbsc1: a refined force field for DNA simulations. Nat. Methods 13 (1), 55-58, 2016
1322016
Relative flexibility of DNA and RNA: a molecular dynamics study
A Noy, A Perez, F Lankas, FJ Luque, M Orozco
Journal of molecular biology 343 (3), 627-638, 2004
1162004
Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides
ALB Pyne, A Noy, K Main, V Velasco-Berrelleza, MM Piperakis, ...
Nature Communications 12, 1053, 2021
1132021
Length scale dependence of DNA mechanical properties
A Noy, R Golestanian
Physical review letters 109 (22), 228101, 2012
1012012
Structure, recognition properties, and flexibility of the DNA⊙ RNA hybrid
A Noy, A Pérez, M Márquez, FJ Luque, M Orozco
Journal of the American Chemical Society 127 (13), 4910-4920, 2005
822005
Theoretical study of large conformational transitions in DNA: the B↔ A conformational change in water and ethanol/water
A Noy, A Perez, CA Laughton, M Orozco
Nucleic acids research 35 (10), 3330-3338, 2007
802007
The impact of monovalent ion force field model in nucleic acids simulations
A Noy, I Soteras, FJ Luque, M Orozco
Physical chemistry chemical physics 11 (45), 10596-10607, 2009
732009
Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation
T Sutthibutpong, C Matek, C Benham, GG Slade, A Noy, C Laughton, ...
Nucleic acids research 44 (19), 9121-9130, 2016
582016
Parmbsc: a refined force field for dna simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature 201, 5, 2016
512016
Theoretical analysis of antisense duplexes: determinants of the RNase H susceptibility
A Noy, FJ Luque, M Orozco
Journal of the American Chemical Society 130 (11), 3486-3496, 2008
422008
Protein/DNA interactions in complex DNA topologies: expect the unexpected
A Noy, T Sutthibutpong, S A. Harris
Biophysical reviews 8 (Suppl 1), 145-155, 2016
402016
Rolling circle RNA synthesis catalyzed by RNA
EL Kristoffersen, M Burman, A Noy, P Holliger
Elife 11, e75186, 2022
352022
Diversification of DNA-binding specificity by permissive and specificity-switching mutations in the ParB/Noc protein family
ASB Jalal, NT Tran, CE Stevenson, EW Chan, R Lo, X Tan, A Noy, ...
Cell reports 32 (3), 2020
322020
Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity
SB Yoshua, GD Watson, JAL Howard, V Velasco-Berrelleza, MC Leake, ...
Nucleic Acids Research 49 (15), 8684–8698, 2021
282021
SerraNA: a program to determine nucleic acids elasticity from simulation data
V Velasco-Berrelleza, M Burman, JW Shepherd, MC Leake, ...
Physical Chemistry Chemical Physics 22 (34), 19254-19266, 2020
272020
Small DNA circles as probes of DNA topology
AD Bates, A Noy, MM Piperakis, SA Harris, A Maxwell
Biochemical Society Transactions 41 (2), 565-570, 2013
272013
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