A Hi–C data-integrated model elucidates E. coli chromosome’s multiscale organization at various replication stages A Wasim, A Gupta, J Mondal Nucleic acids research 49 (6), 3077-3091, 2021 | 24 | 2021 |
Mechanistic underpinning of cell aspect ratio-dependent emergent collective motions in swarming bacteria P Bera, A Wasim, J Mondal, P Ghosh Soft Matter 17 (31), 7322-7331, 2021 | 10 | 2021 |
Hi-C embedded polymer model of Escherichia coli reveals the origin of heterogeneous subdiffusion in chromosomal loci P Bera, A Wasim, J Mondal Physical Review E 105 (6), 064402, 2022 | 9 | 2022 |
Development of a Data-Driven Integrative Model of a Bacterial Chromosome A Wasim, P Bera, J Mondal Journal of Chemical Theory and Computation, 2023 | 6 | 2023 |
Interpretation of organizational role of proteins on E. coli nucleoid via Hi-C integrated model A Wasim, A Gupta, P Bera, J Mondal Biophysical Journal 122 (1), 63-81, 2023 | 5 | 2023 |
A mechanistic understanding of microcolony morphogenesis: coexistence of mobile and sessile aggregates P Bera, A Wasim, P Ghosh Soft Matter 19 (5), 1034-1045, 2023 | 4 | 2023 |
Mapping the multiscale organisation of escherichia coli chromosome in a hi-c-integrated model A Wasim, A Gupta, J Mondal bioRxiv, 2020 | 3 | 2020 |
Protein Translation Can Fluidize Bacterial Cytoplasm P Bera, W Abdul, S Bakshi, J Mondal bioRxiv, 2024.01. 16.575857, 2024 | 1 | 2024 |
Interplay of cell motility and self-secreted extracellular polymeric substance induced depletion effects on spatial patterning in a growing microbial colony P Bera, A Wasim, P Ghosh Soft Matter 19 (42), 8136-8149, 2023 | 1 | 2023 |
Nucleoid associated proteins and their effect on E. coli chromosome A Gupta, A Wasim, J Mondal bioRxiv, 2020 | 1 | 2020 |
Elucidation of Spatial Positioning of Ribosomes around Chromosome in Escherichia coli Cytoplasm via a Data-Informed Polymer-Based Model A Wasim, P Bera, J Mondal The Journal of Physical Chemistry B, 2024 | | 2024 |
A Transformer Based Machine Learning of Molecular Grammar Inherent in Proteins Prone to Liquid Liquid Phase Separation A Wasim, J Mondal bioRxiv, 2024.03. 02.583105, 2024 | | 2024 |
Discovery of dynamic changes in 3D chromatin architecture through polymer physics model Anubhooti, W Abdul, PK Narayan, J Mondal, J Pongubala bioRxiv, 2024.04. 11.589000, 2024 | | 2024 |
Modulation of α-Synuclein Aggregation Amid Diverse Environmental Perturbation A Wasim, S Menon, J Mondal bioRxiv, 2023.10. 19.563053, 2023 | | 2023 |
On the Spatial Positioning of Ribosomes around chromosome in E. coli Cytoplasm W Abdul, P Bera, J Mondal | | 2023 |
Hi-C Contacts Encode Heterogeneity in Sub-diffusive Motion of E. coli Chromosomal Loci P Bera, A Wasim, J Mondal bioRxiv, 2021.09. 07.459285, 2021 | | 2021 |
Mechanistic underpinning of nonuniform collective motions in swarming bacteria P Bera, A Wasim, J Mondal, P Ghosh bioRxiv, 2021.02. 08.430357, 2021 | | 2021 |
Mapping the organization of Esherichia Coli Chromosome in a HI-C integrated model J Mondal, A Wasim, A Gupta APS March Meeting Abstracts 2021, V14. 003, 2021 | | 2021 |
Computational Elucidation of self-organization of E. coli chromosome underlying HI-C data A Wasim, A Gupta, J Mondal | | 2020 |