Steven Salzberg

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Mihaela PerteaAssociate Professor, Johns Hopkins UniversityPatvirtintas el. paštas jhu.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityPatvirtintas el. paštas cs.jhu.edu
Daehwan KimUniversity of Texas Southwestern Medical CenterPatvirtintas el. paštas UTSouthwestern.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonPatvirtintas el. paštas uw.edu
Daniela PuiuJohns Hopkins UniversityPatvirtintas el. paštas jhu.edu
Aleksey V ZiminResearch Scientist, Department of Biomedical Engineering, Johns Hopkins UnviersityPatvirtintas el. paštas jhu.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkPatvirtintas el. paštas umd.edu
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University ofPatvirtintas el. paštas som.umaryland.edu
Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIHPatvirtintas el. paštas nih.gov
Florian P BreitwieserPrincipal Software Engineer at SOPHiA GeneticsPatvirtintas el. paštas jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityPatvirtintas el. paštas cs.jhu.edu
David R KelleyCalico LabsPatvirtintas el. paštas calicolabs.com
David NealeUniversity California, Davis USDAPatvirtintas el. paštas ucdavis.edu
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of MarylandPatvirtintas el. paštas umd.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins UniversityPatvirtintas el. paštas jhmi.edu
Brian HaasBroad InstitutePatvirtintas el. paštas broadinstitute.org
Charles H. LangleyProfessor, University of California - DavisPatvirtintas el. paštas ucdavis.edu
Derrick WoodVeridian InformaticsPatvirtintas el. paštas cs.jhu.edu
Jonathan A. EisenProfessor, University of California, Davis (UC Davis), Department of Evolution and EcologyPatvirtintas el. paštas ucdavis.edu
Sreerama MurthyCEO & Chief Data Scientist, QuadratyxPatvirtintas el. paštas quadratyx.com

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Steven Salzberg

Bloomberg Distinguished Professor, Johns Hopkins University

Patvirtintas el. paštas jhu.edu - Pagrindinis puslapis

Computational Biology Genomics Bioinformatics Metagenomics Biomedical Data Science


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	48791	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	23740	2009
The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, et al. Science 291 (5507), 1304-1351, 2001	20658	2001
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	17827	2015
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ... Nature biotechnology 28 (5), 511-515, 2010	15689	2010
TopHat: discovering splice junctions with RNA-Seq C Trapnell, L Pachter, SL Salzberg Bioinformatics 25 (9), 1105-1111, 2009	13428	2009
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14, 1-13, 2013	13419	2013
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012	13045	2012
FLASH: fast length adjustment of short reads to improve genome assemblies T Magoč, SL Salzberg Bioinformatics 27 (21), 2957-2963, 2011	12759	2011
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. GI Arabidopsis Nature 408 (6814), 796, 2000	11210	2000
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg Nature biotechnology 33 (3), 290-295, 2015	9384	2015
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype D Kim, JM Paggi, C Park, C Bennett, SL Salzberg Nature biotechnology 37 (8), 907-915, 2019	8209	2019
Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5 (2), R12, 2004	5617	2004
Genome sequence of the human malaria parasite Plasmodium falciparum MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ... Nature 419 (6906), 498-511, 2002	5513	2002
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg Nature protocols 11 (9), 1650-1667, 2016	5120	2016
Kraken: ultrafast metagenomic sequence classification using exact alignments DE Wood, SL Salzberg Genome biology 15, 1-12, 2014	4356	2014
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4102	2005
Identifying bacterial genes and endosymbiont DNA with Glimmer AL Delcher, KA Bratke, EC Powers, SL Salzberg Bioinformatics 23 (6), 673-679, 2007	3212	2007
Improved microbial gene identification with GLIMMER AL Delcher, D Harmon, S Kasif, O White, SL Salzberg Nucleic acids research 27 (23), 4636-4641, 1999	2984	1999
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9, 1-22, 2008	2775	2008

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