Ivo Hofacker

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Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Christoph FlammAssociate Professor, Department of Theoretical Chemistry, University of ViennaVerified email at univie.ac.at
Stephan BernhartBioinformatik, Universitaet LeipzigVerified email at bioinf.uni-leipzig.de
Ronny LorenzVerified email at tbi.univie.ac.at
Peter SchusterProfessor der Chemie, Universität WienVerified email at tbi.univie.ac.at
Christian Höner zu SiederdissenUniversität JenaVerified email at uni-jena.de
Stefan WashietlComputer Science and Artificial Intelligence Lab, MITVerified email at mit.edu
Jana Schor (née Hertel)Dr. rer. nat.Verified email at ufz.de
Michael T. WolfingerBioinformatics and Computational Biology, University of ViennaVerified email at univie.ac.at
Andreas R. GruberPaperpile LLCVerified email at paperpile.com
Sebastian WillProfessor of Bioinformatics, LIX, Ecole PolytechniqueVerified email at polytechnique.edu
Walter FontanaProfessor of Systems Biology, Harvard Medical SchoolVerified email at hms.harvard.edu
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
Jan GorodkinVerified email at sund.ku.dk
Manfred TackerUniversity of Applied Sciences, Vienna and Circular Analytics TK GmbHVerified email at fh-campuswien.ac.at
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Reidys ChristianUniversity of VirginiaVerified email at virginia.edu
Kristin Reiche (nee Missal)Head of Bioinformatics Research Unit, Fraunhofer Institute for Cell Therapy and Immunology, LeipzigVerified email at izi.fraunhofer.de
Philipp Kapranov, PhDHuaqiao UniversityVerified email at hqu.edu.cn
Peter KerpedjievSenior Software Engineer, ZymergenVerified email at zymergen.com

Ivo Hofacker

University of Vienna

Verified email at tbi.univie.ac.at - Homepage


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	5797	2007
ViennaRNA Package 2.0 R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ... Algorithms for molecular biology 6, 1-14, 2011	3877	2011
Fast folding and comparison of RNA secondary structures IL Hofacker, W Fontana, PF Stadler, LS Bonhoeffer, M Tacker, P Schuster Monatshefte fur chemie 125, 167-167, 1994	2778	1994
RNA maps reveal new RNA classes and a possible function for pervasive transcription P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ... Science 316 (5830), 1484-1488, 2007	2756	2007
Vienna RNA secondary structure server IL Hofacker Nucleic acids research 31 (13), 3429-3431, 2003	2588	2003
The vienna RNA websuite AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker Nucleic acids research 36 (suppl_2), W70-W74, 2008	2070	2008
From sequences to shapes and back: a case study in RNA secondary structures P Schuster, W Fontana, PF Stadler, IL Hofacker Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1994	1040	1994
Fast and reliable prediction of noncoding RNAs S Washietl, IL Hofacker, PF Stadler Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005	845	2005
Secondary structure prediction for aligned RNA sequences IL Hofacker, M Fekete, PF Stadler Journal of molecular biology 319 (5), 1059-1066, 2002	795	2002
Complete suboptimal folding of RNA and the stability of secondary structures S Wuchty, W Fontana, IL Hofacker, P Schuster Biopolymers: Original Research on Biomolecules 49 (2), 145-165, 1999	732	1999
RNAalifold: improved consensus structure prediction for RNA alignments SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler BMC bioinformatics 9, 1-13, 2008	611	2008
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen PLoS computational biology 3 (4), e65, 2007	554	2007
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler Nature biotechnology 23 (11), 1383-1390, 2005	470	2005
RNA folding at elementary step resolution C Flamm, W Fontana, IL Hofacker, P Schuster Rna 6 (3), 325-338, 2000	407	2000
Thermodynamics of RNA–RNA binding U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ... Bioinformatics 22 (10), 1177-1182, 2006	398	2006
The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7 (1), 1-15, 2006	371	2006
RNAplex: a fast tool for RNA–RNA interaction search H Tafer, IL Hofacker Bioinformatics 24 (22), 2657-2663, 2008	365	2008
RNA folding and combinatory landscapes W Fontana, PF Stadler, EG Bornberg-Bauer, T Griesmacher, IL Hofacker, ... Physical review E 47 (3), 2083, 1993	363	1993
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen Rna 18 (5), 900-914, 2012	336	2012
Partition function and base pairing probabilities of RNA heterodimers SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker Algorithms for Molecular Biology 1, 1-10, 2006	316	2006

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