Seeing the herpesvirus capsid at 8.5 Ĺ ZH Zhou, M Dougherty, J Jakana, J He, FJ Rixon, W Chiu Science 288 (5467), 877-880, 2000 | 441 | 2000 |
Assembly of VP26 in herpes simplex virus-1 inferred from structures of wild-type and recombinant capsids ZH Zhou, J He, J Jakana, JD Tatman, FJ Rixon, W Chiu Nature structural biology 2 (11), 1026-1030, 1995 | 203 | 1995 |
A machine learning approach for the identification of protein secondary structure elements from electron cryo‐microscopy density maps D Si, S Ji, KA Nasr, J He Biopolymers 97 (9), 698-708, 2012 | 105 | 2012 |
Accurate image analysis of the retina using hessian matrix and binarisation of thresholded entropy with application of texture mapping X Yin, BWH Ng, J He, Y Zhang, D Abbott PloS one 9 (4), e95943, 2014 | 96 | 2014 |
Identification of α-helices from low resolution protein density maps A Dal Palů, J He, E Pontelli, Y Lu Computational Systems Bioinformatics, 89-98, 2006 | 85 | 2006 |
Deep convolutional neural networks for detecting secondary structures in protein density maps from cryo-electron microscopy R Li, D Si, T Zeng, S Ji, J He 2016 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2016 | 70 | 2016 |
Beta-sheet detection and representation from medium resolution cryo-EM density maps D Si, J He Proceedings of the International Conference on Bioinformatics, Computational …, 2013 | 57 | 2013 |
Tracing beta strands using StrandTwister from cryo-EM density maps at medium resolutions D Si, J He Structure 22 (11), 1665-1676, 2014 | 49 | 2014 |
Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained -Shortest Path Graph Algorithm K Al Nasr, D Ranjan, M Zubair, L Chen, J He IEEE/ACM transactions on computational biology and bioinformatics 11 (2 …, 2014 | 45 | 2014 |
Ranking valid topologies of the secondary structure elements using a constraint graph K Al Nasr, D Ranjan, M Zubair, J He Journal of bioinformatics and computational biology 9 (03), 415-430, 2011 | 42 | 2011 |
An effective computational method incorporating multiple secondary structure predictions in topology determination for cryo-EM images A Biswas, D Ranjan, M Zubair, S Zeil, K Al Nasr, J He IEEE/ACM transactions on computational biology and bioinformatics 14 (3 …, 2016 | 27 | 2016 |
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions K Al Nasr, L Chen, D Si, D Ranjan, M Zubair, J He Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 26 | 2012 |
Native secondary structure topology has near minimum contact energy among all possible geometrically constrained topologies W Sun, J He Proteins: Structure, Function, and Bioinformatics 77 (1), 159-173, 2009 | 24 | 2009 |
Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm K Al Nasr, C Liu, M Rwebangira, L Burge, J He IEEE/ACM transactions on computational biology and bioinformatics 10 (5 …, 2013 | 23 | 2013 |
Deriving topology and sequence alignment for the helix skeleton in low-resolution protein density maps Y Lu, J He, CEM Strauss Journal of bioinformatics and computational biology 6 (01), 183-201, 2008 | 23 | 2008 |
Finding and using local symmetry in identifying lower domain movements in hexon subunits of the herpes simplex virus type 1 B capsid J He, MF Schmid, ZH Zhou, F Rixon, W Chiu Journal of Molecular Biology 309 (4), 903-914, 2001 | 23 | 2001 |
Structure prediction for the helical skeletons detected from the low resolution protein density map K Al Nasr, W Sun, J He BMC bioinformatics 11, 1-8, 2010 | 22 | 2010 |
From isotropic to anisotropic side chain representations: comparison of three models for residue contact estimation W Sun, J He PLoS One 6 (4), e19238, 2011 | 20 | 2011 |
Tracing actin filament bundles in three-dimensional electron tomography density maps of hair cell stereocilia S Sazzed, J Song, JA Kovacs, W Wriggers, M Auer, J He Molecules 23 (4), 882, 2018 | 19 | 2018 |
Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data A Biswas, D Si, K Al Nasr, D Ranjan, M Zubair, J He Journal of bioinformatics and computational biology 10 (03), 1242006, 2012 | 19 | 2012 |