| Structural basis of transcription inhibition by fidaxomicin (lipiarmycin A3) W Lin, K Das, D Degen, A Mazumder, D Duchi, D Wang, YW Ebright, ... Molecular cell 70 (1), 60-71. e15, 2018 | 95 | 2018 |
| Recent advances in understanding σ70-dependent transcription initiation mechanisms A Mazumder, AN Kapanidis Journal of molecular biology 431 (20), 3947-3959, 2019 | 61 | 2019 |
| The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp D Duchi, A Mazumder, AM Malinen, RH Ebright, AN Kapanidis Nucleic acids research 46 (14), 7284-7295, 2018 | 43 | 2018 |
| Closing and opening of the RNA polymerase trigger loop A Mazumder, M Lin, AN Kapanidis, RH Ebright Proceedings of the National Academy of Sciences 117 (27), 15642-15649, 2020 | 34 | 2020 |
| Recognition of different DNA sequences by a DNA-binding protein alters protein dynamics differentially T Mondol, S Batabyal, A Mazumder, S Roy, SK Pal FEBS letters 586 (3), 258-262, 2012 | 23 | 2012 |
| A Synthetic Peptide Mimic of λ-Cro shows Sequence-Specific Binding in Vitro and in Vivo A Mazumder, A Maiti, K Roy, S Roy ACS chemical biology 7 (6), 1084-1094, 2012 | 14 | 2012 |
| Transcription initiation at a consensus bacterial promoter proceeds via a ‘bind-unwind-load-and-lock’mechanism A Mazumder, RH Ebright, AN Kapanidis Elife 10, e70090, 2021 | 12 | 2021 |
| RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding A Mazumder, A Wang, H Uhm, RH Ebright, AN Kapanidis Nucleic acids research 49 (5), 2790-2802, 2021 | 12 | 2021 |
| Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger–Bertozzi ligation A Chakraborty, A Mazumder, M Lin, A Hasemeyer, Q Xu, D Wang, ... Bacterial Transcriptional Control: Methods and Protocols, 101-131, 2015 | 12 | 2015 |
| Ultrafast interfacial solvation dynamics in specific protein DNA recognition S Batabyal, T Mondol, S Choudhury, A Mazumder, SK Pal Biochimie 95 (11), 2168-2176, 2013 | 8 | 2013 |
| Confinement-free wide-field ratiometric tracking of single fluorescent molecules B Gilboa, B Jing, TJ Cui, M Sow, A Plochowietz, A Mazumder, ... Biophysical Journal 117 (11), 2141-2153, 2019 | 7 | 2019 |
| Peptide based molecules as protein-protein interaction inhibitors: Tools for chemical genetics and therapy S Roy, P Ghosh, N Sekhar Roy, A Mazumder, K Roy, A Kumar Manna, ... Current Chemical Biology 6 (2), 145-163, 2012 | 6 | 2012 |
| A new twist on PIFE: photoisomerisation-related fluorescence enhancement E Ploetz, B Ambrose, A Barth, R Börner, F Erichson, AN Kapanidis, ... Methods and applications in fluorescence 12 (1), 012001, 2023 | 5 | 2023 |
| Bleaching‐resistant, Near‐continuous Single‐molecule Fluorescence and FRET Based on Fluorogenic and Transient DNA Binding M Kümmerlin, A Mazumder, AN Kapanidis ChemPhysChem 24 (12), e202300175, 2023 | 4 | 2023 |
| Transient DNA binding to gapped DNA substrates links DNA sequence to the single-molecule kinetics of protein-DNA interactions R Andrews, H Steuer, AH El-Sagheer, A Mazumder, H el Sayyed, ... bioRxiv, 2022.02. 27.482175, 2022 | 4 | 2022 |
| One-dimensional sliding assists σ70-dependent promoter binding by Escherichia coli RNA polymerase I Heller, M Marchetti, A Mazumder, A Chakraborty, AM Malinowska, ... BioRxiv, 494534, 2018 | 3 | 2018 |
| A peptide-based synthetic transcription factor selectively activates transcription in a mammalian cell K Roy, A Mazumder, P Ghosh, G Naiya, B Ghosh, S Roy Chemical communications 54 (13), 1611-1614, 2018 | 3 | 2018 |
| Specific DNA sequences allosterically enhance protein–protein interaction in a transcription factor through modulation of protein dynamics: implications for specificity of gene … A Mazumder, S Batabyal, M Mondal, T Mondol, S Choudhury, R Ghosh, ... Physical Chemistry Chemical Physics 19 (22), 14781-14792, 2017 | 3 | 2017 |
| A genetic network that balances two outcomes utilizes asymmetric recognition of operator sites A Mazumder, S Bandyopadhyay, A Dhar, DEA Lewis, S Deb, S Dey, ... Biophysical journal 102 (7), 1580-1589, 2012 | 2 | 2012 |
| Single-Molecule Fret Analysis of Key Protein Conformational Changes During Promoter Escape by RNA Polymerase A Wang, A Mazumder, AN Kapanidis Biophysical Journal 120 (3), 109a, 2021 | 1 | 2021 |
Achillefs KapanidisProfessor in Biological Physics, University of OxfordVerified email at physics.ox.ac.uk
