| Extracting conserved gene expression motifs from gene expression data TM Murali, S Kasif Biocomputing 2003, 77-88, 2002 | 522 | 2002 |
| A Monte Carlo algorithm for fast projective clustering CM Procopiuc, M Jones, PK Agarwal, TM Murali Proceedings of the 2002 ACM SIGMOD international conference on Management of …, 2002 | 508 | 2002 |
| Whole-genome annotation by using evidence integration in functional-linkage networks U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004 | 405 | 2004 |
| The landscape of human proteins interacting with viruses and other pathogens MD Dyer, TM Murali, BW Sobral PLoS pathogens 4 (2), e32, 2008 | 359 | 2008 |
| Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data A Pratapa, AP Jalihal, JN Law, A Bharadwaj, TM Murali Nature methods 17 (2), 147-154, 2020 | 338 | 2020 |
| RankGene: identification of diagnostic genes based on expression data Y Su, TM Murali, V Pavlovic, M Schaffer, S Kasif Bioinformatics 19 (12), 1578-1579, 2003 | 242 | 2003 |
| Computational prediction of host-pathogen protein–protein interactions MD Dyer, TM Murali, BW Sobral Bioinformatics 23 (13), i159-i166, 2007 | 207 | 2007 |
| The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis MD Dyer, C Neff, M Dufford, CG Rivera, D Shattuck, J Bassaganya-Riera, ... PloS one 5 (8), e12089, 2010 | 153 | 2010 |
| Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin JZ Ruscio, D Kumar, M Shukla, MG Prisant, TM Murali, AV Onufriev Proceedings of the National Academy of Sciences 105 (27), 9204-9209, 2008 | 153 | 2008 |
| Consistent solid and boundary representations from arbitrary polygonal data TM Murali, TA Funkhouser Proceedings of the 1997 symposium on Interactive 3D graphics, 155-ff., 1997 | 149 | 1997 |
| New similarity measures between polylines with applications to morphing and polygon sweeping A Efrat, LJ Guibas, JSB Har-Peled, Sariel, Mitchell, TM Murali Discrete & Computational Geometry 28 (4), 535-569, 2002 | 113 | 2002 |
| Supervised learning and prediction of physical interactions between human and HIV proteins MD Dyer, TM Murali, BW Sobral Infection, Genetics and Evolution 11 (5), 917-923, 2011 | 111 | 2011 |
| Sweeping simple polygons with a chain of guards A Efrat, LJ Guibas, S Har-Peled, DC Lin, JSB Mitchell, TM Murali Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms …, 2000 | 110 | 2000 |
| The art of gene function prediction TM Murali, CJ Wu, S Kasif Nature biotechnology 24 (12), 1474-1475, 2006 | 97 | 2006 |
| Planning robot motion strategies for efficient model construction H González-Baños, E Mao, JC Latombe, TM Murali, A Efrat Robotics Research: The Ninth International Symposium, 345-352, 2000 | 94 | 2000 |
| Response diversity of Arabidopsis thaliana ecotypes in elevated [CO2] in the field P Li, A Sioson, SP Mane, A Ulanov, G Grothaus, LS Heath, TM Murali, ... Plant molecular biology 62, 593-609, 2006 | 82 | 2006 |
| I/O-efficient algorithms for contour line extraction and planar graph blocking PK Agarwal, L Arge, TM Murali, V Kasturi R, JS Vitter Society for Industrial and Applied Mathematics, 1998 | 81 | 1998 |
| Cylindrical static and kinetic binary space partitions PK Agarwal, LJ Guibas, TM Murali, JS Vitter Proceedings of the thirteenth annual symposium on Computational geometry, 39-48, 1997 | 76 | 1997 |
| PIG—the pathogen interaction gateway T Driscoll, MD Dyer, TM Murali, BW Sobral Nucleic acids research 37 (suppl_1), D647-D650, 2009 | 72 | 2009 |
| From START to FINISH: computational analysis of cell cycle control in budding yeast P Kraikivski, KC Chen, T Laomettachit, TM Murali, JJ Tyson NPJ systems biology and applications 1 (1), 1-9, 2015 | 66 | 2015 |
Simon KasifProfessor of Biomedical Engineering, Computer Science and Bioinformatics, Boston UniversityVerified email at bu.edu
