Juan Fernandez-Recio
Juan Fernandez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV), CSIC / Uni. Rioja / Gob. Rioja
Verified email at - Homepage
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Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
pyDock: Electrostatics and desolvation for effective scoring of rigid‐body protein–protein docking
TMK Cheng, TL Blundell, J Fernandez‐Recio
Proteins: Structure, Function, and Bioinformatics 68 (2), 503-515, 2007
Identification of protein–protein interaction sites from docking energy landscapes
J Fernandez-Recio, M Totrov, R Abagyan
Journal of molecular biology 335 (3), 843-865, 2004
SwarmDock: a server for flexible protein–protein docking
M Torchala, IH Moal, RAG Chaleil, J Fernandez-Recio, PA Bates
Bioinformatics 29 (6), 807-809, 2013
SKEMPI: a structural kinetic and energetic database of mutant protein interactions and its use in empirical models
IH Moal, J Fernández-Recio
Bioinformatics 28 (20), 2600-2607, 2012
pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring
B Jiménez-García, C Pons, J Fernández-Recio
Bioinformatics 29 (13), 1698-1699, 2013
ICM‐DISCO docking by global energy optimization with fully flexible side‐chains
J Fernández‐Recio, M Totrov, R Abagyan
Proteins: Structure, Function, and Bioinformatics 52 (1), 113-117, 2003
Soft protein–protein docking in internal coordinates
J Fernández‐Recio, M Totrov, R Abagyan
Protein Science 11 (2), 280-291, 2002
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation
J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ...
Bioinformatics 35 (3), 462-469, 2019
Optimal docking area: a new method for predicting protein–protein interaction sites
J Fernandez‐Recio, M Totrov, C Skorodumov, R Abagyan
PROTEINS: Structure, Function, and bioinformatics 58 (1), 134-143, 2005
Polygalacturonase inhibiting proteins: players in plant innate immunity?
L Federici, A Di Matteo, J Fernandez-Recio, D Tsernoglou, F Cervone
Trends in Plant Science 11 (2), 65-70, 2006
Assembly and channel opening in a bacterial drug efflux machine
VN Bavro, Z Pietras, N Furnham, L Pérez-Cano, J Fernández-Recio, ...
Molecular cell 30 (1), 114-121, 2008
The Crystal Structure of Fibroblast Growth Factor (FGF) 19 Reveals Novel Features of the FGF Family and Offers a Structural Basis for Its Unusual Receptor Affinity,
NJ Harmer, L Pellegrini, D Chirgadze, J Fernandez-Recio, TL Blundell
Biochemistry 43 (3), 629-640, 2004
FRODOCK: a new approach for fast rotational protein–protein docking
JI Garzon, JR Lopéz-Blanco, C Pons, J Kovacs, R Abagyan, ...
Bioinformatics 25 (19), 2544-2551, 2009
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
Identification of hot-spot residues in protein-protein interactions by computational docking
S Grosdidier, J Fernández-Recio
BMC bioinformatics 9, 1-13, 2008
The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 Å resolution
L Federici, D Du, F Walas, H Matsumura, J Fernandez-Recio, ...
Journal of Biological Chemistry 280 (15), 15307-15314, 2005
The structure of human 4F2hc ectodomain provides a model for homodimerization and electrostatic interaction with plasma membrane
J Fort, LR de la Ballina, HE Burghardt, C Ferrer-Costa, J Turnay, ...
Journal of Biological Chemistry 282 (43), 31444-31452, 2007
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
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