| A unified coarse-grained model of biological macromolecules based on mean-field multipolemultipole interactions A Liwo, M Baranowski, C Czaplewski, E Gołaś, Y He, D Jagieła, P Krupa, ... Journal of molecular modeling 20, 1-15, 2014 | 140 | 2014 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 115 | 2019 |
| WeFold: a coopetition for protein structure prediction GA Khoury, A Liwo, F Khatib, H Zhou, G Chopra, J Bacardit, LO Bortot, ... Proteins: Structure, Function, and Bioinformatics 82 (9), 1850-1868, 2014 | 73 | 2014 |
| Lessons from application of the UNRES force field to predictions of structures of CASP10 targets Y He, MA Mozolewska, P Krupa, AK Sieradzan, TK Wirecki, A Liwo, ... Proceedings of the National Academy of Sciences 110 (37), 14936-14941, 2013 | 68 | 2013 |
| Performance of protein-structure predictions with the physics-based UNRES force field in CASP11 P Krupa, MA Mozolewska, M Wiśniewska, Y Yin, Y He, AK Sieradzan, ... Bioinformatics 32 (21), 3270-3278, 2016 | 48 | 2016 |
| Molecular modeling of the binding modes of the iron‐sulfur protein to the Jac1 co‐chaperone from Saccharomyces cerevisiae by all‐atom and coarse‐grained
MA Mozolewska, P Krupa, HA Scheraga, A Liwo Proteins: Structure, Function, and Bioinformatics 83 (8), 1414-1426, 2015 | 35 | 2015 |
| Inhibitors or toxins? Large library target-specific screening of fullerene-based nanoparticles for drug design purpose L Ahmed, B Rasulev, S Kar, P Krupa, MA Mozolewska, J Leszczynski Nanoscale 9 (29), 10263-10276, 2017 | 30 | 2017 |
| Prediction of protein structure with the coarse‐grained UNRES force field assisted by small X‐ray scattering data and knowledge‐based information AS Karczyńska, MA Mozolewska, P Krupa, A Giełdoń, A Liwo, ... Proteins: Structure, Function, and Bioinformatics 86, 228-239, 2018 | 27 | 2018 |
| An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12 C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ... Scientific reports 8 (1), 9939, 2018 | 23 | 2018 |
| Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers A Liwo, C Czaplewski, AK Sieradzan, EA Lubecka, AG Lipska, Ł Golon, ... Progress in Molecular Biology and Translational Science 170, 73-122, 2020 | 20 | 2020 |
| Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment EA Lubecka, AS Karczyńska, AG Lipska, AK Sieradzan, K Ziȩba, ... Journal of Molecular Graphics and Modelling 92, 154-166, 2019 | 20 | 2019 |
| Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets A Karczyńska, MA Mozolewska, P Krupa, A Giełdoń, KK Bojarski, ... Journal of Molecular Graphics and Modelling 83, 92-99, 2018 | 20 | 2018 |
| Prediction of protein structure by template-based modeling combined with the UNRES force field P Krupa, MA Mozolewska, K Joo, J Lee, C Czaplewski, A Liwo Journal of Chemical Information and Modeling 55 (6), 1271-1281, 2015 | 20 | 2015 |
| Dynamics of disulfide-bond disruption and formation in the thermal unfolding of ribonuclease A P Krupa, AK Sieradzan, MA Mozolewska, H Li, A Liwo, HA Scheraga Journal of chemical theory and computation 13 (11), 5721-5730, 2017 | 17 | 2017 |
| Preventing fibril formation of a protein by selective mutation GG Maisuradze, J Medina, K Kachlishvili, P Krupa, MA Mozolewska, ... Proceedings of the National Academy of Sciences 112 (44), 13549-13554, 2015 | 17 | 2015 |
| Unveiling new interdependencies between significant DNA methylation sites, gene expression profiles and glioma patients survival MJ Dabrowski, M Draminski, K Diamanti, K Stepniak, MA Mozolewska, ... Scientific reports 8 (1), 4390, 2018 | 16 | 2018 |
| UNRES-Dockproteinprotein and peptideprotein docking by coarse-grained replica-exchange MD simulations P Krupa, AS Karczyńska, MA Mozolewska, A Liwo, C Czaplewski Bioinformatics 37 (11), 1613-1615, 2021 | 15 | 2021 |
| Use of restraints from consensus fragments of multiple server models to enhance protein-structure prediction capability of the UNRES force field MA Mozolewska, P Krupa, B Zaborowski, A Liwo, J Lee, K Joo, ... Journal of Chemical Information and Modeling 56 (11), 2263-2279, 2016 | 15 | 2016 |
| Modeling the structure, dynamics, and transformations of proteins with the UNRES force field AK Sieradzan, C Czaplewski, P Krupa, MA Mozolewska, AS Karczyńska, ... Protein folding: Methods and protocols, 399-416, 2022 | 13 | 2022 |
| Improved consensus-fragment selection in template-assisted prediction of protein structures with the UNRES force field in CASP13 AS Karczyńska, K Ziȩba, U Uciechowska, MA Mozolewska, P Krupa, ... Journal of Chemical Information and Modeling 60 (3), 1844-1864, 2020 | 11 | 2020 |
Paweł KrupaInstitute of Physics Polish Academy of SciencesPatvirtintas el. paštas etoh.chem.univ.gda.pl
