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Ana Sofia Fernandes Oliveira
Ana Sofia Fernandes Oliveira
School of Biochemistry & Center for Computational Chemistry, University of Bristol, UK
Verified email at bristol.ac.uk - Homepage
Title
Cited by
Cited by
Year
Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase
FMA Valente, ASF Oliveira, N Gnadt, I Pacheco, AV Coelho, AV Xavier, ...
JBIC Journal of Biological Inorganic Chemistry 10, 667-682, 2005
1142005
On the Use of Different Dielectric Constants for Computing Individual and Pairwise Terms in Poisson− Boltzmann Studies of Protein Ionization Equilibrium
VH Teixeira, CA Cunha, M Machuqueiro, ASF Oliveira, BL Victor, ...
The journal of physical chemistry B 109 (30), 14691-14706, 2005
1102005
Conformational changes induced by ATP‐hydrolysis in an ABC transporter: A molecular dynamics study of the Sav1866 exporter
AS Oliveira, AM Baptista, CM Soares
Proteins: Structure, Function, and Bioinformatics 79 (6), 1977-1990, 2011
752011
Structural consequences of ATP hydrolysis on the ABC transporter NBD dimer: molecular dynamics studies of HlyB
JM Damas, ASF Oliveira, AM Baptista, CM Soares
Protein Science 20 (7), 1220-1230, 2011
612011
# COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol
A Dommer, L Casalino, F Kearns, M Rosenfeld, N Wauer, SH Ahn, ...
The international journal of high performance computing applications 37 (1 …, 2023
572023
Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics
I Galdadas, S Qu, Oliveira, ASF, E Olehnovics, AR Mack, MF Mojica, ...
eLife 1, 2021
452021
A potential interaction between the SARS-CoV-2 spike protein and nicotinic acetylcholine receptors
ASF Oliveira, AA Ibarra, I Bermudez, L Casalino, Z Gaieb, DK Shoemark, ...
Biophys Journal 120, 983–993, 2021
452021
Unlocking Nicotinic Selectivity via Direct C‒H Functionalization of (−)-Cytisine
HR Campello, SG Del Villar, A Honraedt, T Minguez, ASF Oliveira, ...
Chem, inpress, 2018
382018
Inter-domain Communication Mechanisms in an ABC Importer: A Molecular Dynamics Study of the MalFGK2E Complex
ASF Oliveira, AM Baptista, CM Soares
PLoS computational biology 7 (8), e1002128, 2011
382011
Insights into the molecular mechanism of an ABC transporter: conformational changes in the NBD dimer of MJ0796
ASF Oliveira, AM Baptista, CM Soares
The Journal of Physical Chemistry B 114 (16), 5486-5496, 2010
382010
Molecular dynamics simulations support the hypothesis that the brGDGT paleothermometer is based on homeoviscous adaptation
BDA Naafs, ASF Oliveira, AJ Mulholland
Geochimica et Cosmochimica Acta 312, 44-56, 2021
342021
Structural and Functional insights into the catalytic mechanism of the Type II NADH:quinone oxidoreductase family
BC Marreiros, FV Sena, FM Sousa, ASF Oliveira, CM Soares, AP Batista, ...
Scientific Reports 7 (42303), 1-13, 2017
282017
Exploring O2 Diffusion in A-Type Cytochrome c Oxidases: Molecular Dynamics Simulations Uncover Two Alternative Channels towards the Binuclear Site
ASF Oliveira, JM Damas, AM Baptista, CM Soares
PLoS computational biology 10 (12), e1004010, 2014
272014
F.; Victor, BL; Soares, CM; Baptista, AM On the Use of Different Dielectric Constants for Computing Individual and Pairwise Terms in Poisson-Boltzmann Studies of Protein …
VH Teixeira, CA Cunha, M Machuqueiro, AS Oliveira
J. Phys. Chem. B 109 (30), 14691-14706, 2005
272005
Reorganization and conformational changes in the reduction of tetraheme cytochromes
ASF Oliveira, VH Teixeira, AM Baptista, CM Soares
Biophysical journal 89 (6), 3919-3930, 2005
262005
Coupling between protonation and conformation in cytochrome c oxidase: Insights from constant-pH MD simulations
ASF Oliveira, SRR Campos, AM Baptista, CM Soares
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1857 (6), 759-771, 2016
252016
Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2
K Gupta, C Toelzer, MK Williamson, DK Shoemark, ASF Oliveira, ...
Nature communications 13 (1), 222, 2022
232022
Simulations support the interaction of the SARS-CoV-2 spike protein with nicotinic acetylcholine receptors
ASF Oliveira, AA Amaurys, I Bermudez, C Lorenzo, G Zied, DK Shoemark, ...
bioRxiv, 2020
232020
Identification of the Initial Steps in Signal Transduction in the α4β2 Nicotinic Receptor: Insights from Equilibrium and Nonequilibrium Simulations
ASF Oliveira, DK Shoemark, HR Campello, S Wonnacott, T Gallagher, ...
Structure 27 (7), 1171-1183.e3, 2019
232019
Dynamical nonequilibrium molecular dynamics reveals the structural basis for allostery and signal propagation in biomolecular systems
ASF Oliveira, G Ciccotti, S Haider, AJ Mulholland
The European Physical Journal B 94, 1-12, 2021
222021
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