Stebėti
Tunahan Cakir
Tunahan Cakir
Department of Bioengineering, Gebze Technical University
Patvirtintas el. paštas gtu.edu.tr - Pagrindinis puslapis
Pavadinimas
Cituota
Cituota
Metai
Integration of metabolome data with metabolic networks reveals reporter reactions
T Çakır, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen
Molecular systems biology 2, 50, 2006
1692006
PHISTO: pathogen–host interaction search tool
S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ...
Bioinformatics 29 (10), 1357-1358, 2013
1592013
A review on computational systems biology of pathogen–host interactions
S Durmuş, T Çakır, A Özgür, R Guthke
Frontiers in Microbiology 6, 235, 2015
1242015
Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia
T Çakιr, S Alsan, H Saybaşιlι, A Akιn, KÖ Ülgen
Theoretical Biology and Medical Modelling 4 (1), 48, 2007
1142007
Infection Strategies of Bacterial and Viral Pathogens through Pathogen–Human Protein–Protein Interactions
SD Tekir, T Çakır, KÖ Ülgen
Frontiers in Microbiology 3, 46, 2012
882012
Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks
T Çakır, B Kırdar, KÖ Ülgen
Biotechnology and bioengineering 86 (3), 251-260, 2004
862004
Metabolic network discovery through reverse engineering of metabolome data
T Çakır, MMWB Hendriks, JA Westerhuis, AK Smilde
Metabolomics 5 (3), 318-329, 2009
782009
Abnormal brain cholesterol homeostasis in Alzheimer’s disease—a targeted metabolomic and transcriptomic study
VR Varma, HB Lüleci, AM Oommen, S Varma, CT Blackshear, ...
npj Aging and Mechanisms of Disease 7 (1), 1-14, 2021
67*2021
Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network
M Sertbaş, K Ülgen, T Çakır
FEBS open bio 4, 542-553, 2014
662014
Metabolic pathway analysis of enzyme-deficient human red blood cells
T Çakır, CS Tacer, KÖ Ülgen
Biosystems 78 (1-3), 49-67, 2004
512004
Effect of iron and magnesium addition on population dynamics and high value product of microalgae grown in anaerobic liquid digestate
H Ermis, U Guven-Gulhan, T Cakir, M Altinbas
Scientific reports 10 (1), 3510, 2020
462020
Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae
T Çakır, B Kırdar, Zİ Önsan, K Ülgen, J Nielsen
BMC systems biology 1 (1), 18, 2007
462007
Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation
T Çakır, MJ Khatibipour
Frontiers in Bioengineering and Biotechnology 2, 62, 2014
402014
A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris
E Özcan, SS Selvi, E Nikerel, B Teusink, E Toksoy Öner, T Çakır
Applied Microbiology and Biotechnology 103, 3153-3165, 2019
382019
Reconstructed Metabolic Network Models Predict Flux-Level Metabolic Reprogramming in Glioblastoma
E Ozcan, T Cakir
Frontiers in Neuroscience 10, 156, 2016
37*2016
Flux Balance Analysis of a Genome‐Scale Yeast Model Constrained by Exometabolomic Data Allows Metabolic System Identification of Genetically Different Strains
T Çakır, Ç Efe, D Dikicioǧlu, A Hortaçsu, B Kırdar, SG Oliver
Biotechnology progress 23 (2), 320-326, 2007
372007
Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production
T Çakır, KY Arga, MM Altıntaş, KÖ Ülgen
Process biochemistry 39 (12), 2097-2108, 2004
372004
Network-based metabolism-centered screening of potential drug targets in Klebsiella pneumoniae at genome scale
MF Cesur, B Siraj, R Uddin, S Durmuş, T Çakır
Frontiers in Cellular and Infection Microbiology 9, 447, 2020
342020
Modelling of calcium dynamics in brain energy metabolism and alzheimer's disease
S Tiveci, A Akın, T Çakır, H Saybaşılı, K Ülgen
Computational biology and chemistry 29 (2), 151-162, 2005
262005
Dynamic co‐culture metabolic models reveal the fermentation dynamics, metabolic capacities and interplays of cheese starter cultures
E Özcan, M Seven, B Şirin, T Çakır, E Nikerel, B Teusink, E Toksoy Öner
Biotechnology and Bioengineering 118 (1), 223-237, 2021
202021
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Straipsniai 1–20