| Predicting protein–DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver Y Peng, L Sun, Z Jia, L Li, E Alexov Bioinformatics 34 (5), 779-786, 2017 | 73 | 2017 |
| Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations L Li, Z Jia, Y Peng, S Godar, I Getov, S Teng, J Alper, E Alexov Scientific reports 7 (1), 1-12, 2017 | 66* | 2017 |
| DelPhi Suite: New Developments and Review of Functionalities C Li, Z Jia, A Chakravorty, S Pahari, Y Peng, S Basu, M Koirala, ... Journal of Computational Chemistry., 2019 | 53 | 2019 |
| DelPhiForce web server: electrostatic forces and energy calculations and visualization L Li, Z Jia, Y Peng, A Chakravorty, L Sun, E Alexov Bioinformatics 33 (22), 3661-3663, 2017 | 46 | 2017 |
| Treating ion distribution with Gaussian‐based smooth dielectric function in DelPhi Z Jia, L Li, A Chakravorty, E Alexov Journal of Computational Chemistry, 2017 | 32 | 2017 |
| CpG-ODN attenuates pathological cardiac hypertrophy and heart failure by activation of PI3Kα-Akt signaling L Yang, X Cai, J Liu, Z Jia, J Jiao, J Zhang, C Li, J Li, XD Tang PloS one 8 (4), e62373, 2013 | 32 | 2013 |
| Exercise protects against chronic β-adrenergic remodeling of the heart by activation of endothelial nitric oxide synthase L Yang, Z Jia, L Yang, M Zhu, J Zhang, J Liu, P Wu, W Tian, J Li, Z Qi, ... PLoS One 9 (5), e96892, 2014 | 31 | 2014 |
| Gaussian-Based Smooth Dielectric Function: A Surface-Free Approach for Modeling Macromolecular Binding in Solvents A Chakravorty, Z Jia, Y Peng, N Tajielyato, L Wang, E Alexov Frontiers in molecular biosciences 5, 25, 2018 | 26 | 2018 |
| A new DelPhi feature for modeling electrostatic potential around proteins: Role of bound ions and implications for Zeta-potential A Chakravorty, Z Jia, L Li, E Alexov Langmuir 33 (9), 2283-2295, 2017 | 25 | 2017 |
| Reproducing the ensemble average polar solvation energy of a protein from a single structure: gaussian-based smooth dielectric function for macromolecular modeling A Chakravorty, Z Jia, L Li, S Zhao, E Alexov Journal of chemical theory and computation 14 (2), 1020-1032, 2018 | 23 | 2018 |
| DFMD: fast and effective DelPhiForce steered molecular dynamics approach to model ligand approach toward a receptor: Application to spermine synthase enzyme Y Peng, Y Yang, L Li, Z Jia, W Cao, E Alexov Frontiers in molecular biosciences 6, 74, 2019 | 16 | 2019 |
| Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0] SK Panday, MHB Shashikala, M Koirala, S Pahari, A Chakvorty, Y Peng, ... Living Journal of Computational Molecular Science 1 (2), 10841, 2019 | 9 | 2019 |
| Net motion of a charged macromolecule in a ratchet-slit Z Wang, Z Jia, X He Soft Matter 9 (46), 11107-11112, 2013 | 8 | 2013 |
| Effects from metal ion in tumor endothelial marker 8 and anthrax protective antigen: BioLayer Interferometry experiment and molecular dynamics simulation study Z Jia, C Ackroyd, T Han, V Agrawal, Y Liu, K Christensen, B Dominy Journal of Computational Chemistry 38 (15), 1183-1190, 2017 | 7 | 2017 |
| A covert data transport protocol Y Fu, Z Jia, L Yu, X Zhong, R Brooks Malicious and Unwanted Software (MALWARE), 2016 11th International …, 2016 | 7 | 2016 |
| The capricious electrostatic force: Revealing the signaling pathway in integrin α2-I domain Z Jia, L Li, Y Peng, F Ding, E Alexov Journal of Theoretical and Computational Chemistry 17 (03), 1840001, 2018 | 3 | 2018 |
| Molecular mechanics studies of protein signaling and conformation change Z Jia Clemson University, 2016 | 3 | 2016 |
| Truth and lies of MM/GBSA Z Jia, V Agrawal, Y Liu, T Han, B Dominy ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016 | 1 | 2016 |
| Simulation study of integrin alpha-2 I domain activation Z Jia, E Alexov ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017 | | 2017 |
| Transition-state analysis of the uracil DNA glycosylase Y Liu, T Han, Z Jia, V Agrawal, B Dominy ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016 | | 2016 |
Emil AlexovClemson UniversityVerified email at g.clemson.edu
Emil AlexovClemson UniversityVerified email at g.clemson.edu