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John E. Stone
John E. Stone
Distinguished Engineer, Scientific Visualization DevTech, NVIDIA Corporation
Verified email at nvidia.com - Homepage
Title
Cited by
Cited by
Year
GPU computing
JD Owens, M Houston, D Luebke, S Green, JE Stone, JC Phillips
Proceedings of the IEEE 96 (5), 879-899, 2008
28432008
OpenCL: A parallel programming standard for heterogeneous computing systems
JE Stone, D Gohara, G Shi
Computing in science & engineering 12 (3), 66-73, 2010
22662010
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of Chemical Physics 153 (4), 044130, 2020
16972020
Accelerating molecular modeling applications with graphics processors
JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten
Journal of Computational Chemistry 28 (16), 2618-2640, 2007
9292007
GPU-accelerated molecular modeling coming of age
JE Stone, DJ Hardy, IS Ufimtsev, K Schulten
Journal of Molecular Graphics and Modelling 29 (2), 116-125, 2010
5032010
An Efficient Library for Parallel Ray Tracing and Animation
JE Stone
University of Missouri-Rolla, 1998
4781998
GPU clusters for high-performance computing
VV Kindratenko, JJ Enos, G Shi, MT Showerman, GW Arnold, JE Stone, ...
2009 IEEE International Conference on Cluster Computing and Workshops, 1-8, 2009
3212009
Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units--Radial Distribution Function Histogramming
BG Levine, JE Stone, A Kohlmeyer
Journal of Computational Physics 230 (9), 3556-3569, 2011
2762011
An asymmetric distributed shared memory model for heterogeneous parallel systems
I Gelado, JE Stone, J Cabezas, S Patel, N Navarro, WW Hwu
ACM SIGARCH Computer Architecture News 38 (1), 347-358, 2010
2632010
A system for interactive molecular dynamics simulation
JE Stone, J Gullingsrud, K Schulten
Proceedings of the 2001 symposium on Interactive 3D graphics, 191-194, 2001
2502001
Adapting a message-driven parallel application to GPU-accelerated clusters
JC Phillips, JE Stone, K Schulten
SC'08: Proceedings of the 2008 ACM/IEEE Conference on Supercomputing, 1-9, 2008
2422008
Using VMD: an introductory tutorial
J Hsin, A Arkhipov, Y Yin, JE Stone, K Schulten
Current protocols in bioinformatics 24 (1), 5.7. 1-5.7. 48, 2008
1922008
QwikMD—Integrative Molecular Dynamics Toolkit for Novices and Experts
JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ...
Scientific reports 6, 26536, 2016
1812016
NAMD goes quantum: an integrative suite for hybrid simulations
MCR Melo, RC Bernardi, T Rudack, M Scheurer, C Riplinger, JC Phillips, ...
Nature methods 15 (5), 351-354, 2018
1762018
Multilevel summation of electrostatic potentials using graphics processing units
DJ Hardy, JE Stone, K Schulten
Parallel Computing 35 (3), 164-177, 2009
1662009
GPU acceleration of cutoff pair potentials for molecular modeling applications
CI Rodrigues, DJ Hardy, JE Stone, K Schulten, WMW Hwu
Proceedings of the 5th conference on Computing frontiers, 273-282, 2008
1622008
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics
L Casalino, AC Dommer, Z Gaieb, EP Barros, T Sztain, SH Ahn, A Trifan, ...
The International Journal of High Performance Computing Applications 35 (5 …, 2021
1482021
Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps
A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten
eLife 5, e16105, 2016
1452016
Lattice microbes: High‐performance stochastic simulation method for the reaction‐diffusion master equation
E Roberts, JE Stone, Z Luthey‐Schulten
Journal of Computational Chemistry 34 (3), 245-255, 2013
1402013
Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories
M Krone, J Stone, T Ertl, K Schulten
EuroVis-Short Papers, 67-71, 2012
1342012
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