| Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ... Annals of Oncology 31 (6), 745-759, 2020 | 1089 | 2020 |
| Identification of alternative topological domains in chromatin D Filippova, R Patro, G Duggal, C Kingsford Algorithms for Molecular Biology 9, 1-11, 2014 | 249 | 2014 |
| Development of a comprehensive cell-free DNA (cfDNA) assay for early detection of multiple tumor types: the Circulating Cell-Free Genome Atlas (CCGA) study Journal of Clinical Oncology 36 (15), 12021, 2018 | 67 | 2018 |
| Prevalence of clonal hematopoiesis of indeterminate potential (CHIP) measured by an ultra-sensitive sequencing assay: Exploratory analysis of the Circulating Cancer Genome
C Swanton, O Venn, A Aravanis, E Hubbell, T Maddala, JF Beausang, ... Journal of Clinical Oncology 36 (15_suppl), 12003-12003, 2018 | 52 | 2018 |
| ICE--visual analytics for transportation incident datasets ML Pack, K Wongsuphasawat, M VanDaniker, D Filippova 2009 IEEE International Conference on Information Reuse & Integration, 200-205, 2009 | 51 | 2009 |
| Visual analytics for transportation incident data sets K Wongsuphasawat, ML Pack, D Filippova, M VanDaniker, A Olea Transportation research record 2138 (1), 135-145, 2009 | 43 | 2009 |
| Plasma cell-free DNA (cfDNA) assays for early multi-cancer detection: The circulating cell-free genome atlas (CCGA) study MC Liu, E Klein, E Hubbell, T Maddala, AM Aravanis, JF Beausang, ... Annals of Oncology 29, viii14, 2018 | 42 | 2018 |
| Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters D Pellow, D Filippova, C Kingsford Journal of Computational Biology 24 (6), 547-557, 2017 | 37 | 2017 |
| Genome-wide sequencing for early stage lung cancer detection from plasma cell-free DNA (cfDNA): the Circulating Cell-free Genome Atlas (CCGA) Study GR Oxnard J Clin Oncol 36, 18, 2018 | 32 | 2018 |
| Breast cancer cell-free DNA (cfDNA) profiles reflect underlying tumor biology: The Circulating Cell-Free Genome Atlas (CCGA) study MC Liu, T Maddala, A Aravanis, E Hubbell, JF Beausang, D Filippova, ... J Clin Oncol 36 (15_suppl), 536, 2018 | 29 | 2018 |
| Resolving spatial inconsistencies in chromosome conformation measurements G Duggal, R Patro, E Sefer, H Wang, D Filippova, S Khuller, C Kingsford Algorithms for Molecular Biology 8, 1-10, 2013 | 20 | 2013 |
| Coral: an integrated suite of visualizations for comparing clusterings D Filippova, A Gadani, C Kingsford BMC Bioinformatics 13, 276, 2012 | 17 | 2012 |
| The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients JEVEDT Arsen Osipov, Ognjen Nikolic, Arkadiusz Gertych, Sarah Parker, Andrew ... Nature Cancer, 2024 | 15 | 2024 |
| Multiscale Identification of Topological Domains in Chromatin D Filippova, R Patro, G Duggal, C Kingsford Proceedings of WABI 2013, 300-312, 2013 | 15 | 2013 |
| The missing models: A data-driven approach for learning how networks grow R Patro, G Duggal, E Sefer, H Wang, D Filippova, C Kingsford Proceedings of the 18th ACM SIGKDD international conference on Knowledge
, 2012 | 12 | 2012 |
| Interactive exploration of multivariate categorical data: exploiting ranking criteria to reveal patterns and outliers D Filippova, B Shneiderman Human-Computer Interaction Lab, University of Maryland, Technical Report
, 2009 | 9 | 2009 |
| Dynamic exploration of recording sessions between jazz musicians over time D Filippova, M Fitzgerald, F Benadon, C Kingsford SocialCom, 2012 | 8 | 2012 |
| Multi-Assay Prediction Model for Cancer Detection E Hubbell, SS Gross, D Filippova, L Shen, OC Venn, AW Blocker, ... US Patent App. 16/384,784, 2019 | 7 | 2019 |
| Method and system for selecting, managing, and analyzing data of high dimensionality D Filippova, A Valouev, V Nicula, K Jagadeesh, MC MAHER, MH Larson, ... US Patent App. 16/352,739, 2019 | 7 | 2019 |
| Rapid, Separable Compression Enables Fast Analyses of Sequence Alignments D Filippova, C Kingsford BCB, 8, 2015 | 5 | 2015 |
Carl KingsfordProfessor, Computational Biology Department, School of Computer Science, CarnegiePatvirtintas el. paštas cs.cmu.edu
