Follow
Kwangho Nam
Kwangho Nam
Unknown affiliation
Verified email at uta.edu
Title
Cited by
Cited by
Year
Mechanisms and free energies of enzymatic reactions
J Gao, S Ma, DT Major, K Nam, J Pu, DG Truhlar
Chemical reviews 106 (8), 3188-3209, 2006
4552006
An efficient linear-scaling Ewald method for long-range electrostatic interactions in combined QM/MM calculations
K Nam, J Gao, DM York
Journal of Chemical Theory and Computation 1 (1), 2-13, 2005
3132005
Specific reaction parametrization of the AM1/d Hamiltonian for phosphoryl transfer reactions: H, O, and P atoms
K Nam, Q Cui, J Gao, DM York
Journal of Chemical Theory and Computation 3 (2), 486-504, 2007
1742007
Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme
Y Qi, MC Spong, K Nam, A Banerjee, S Jiralerspong, M Karplus, ...
Nature 462 (7274), 762-766, 2009
1622009
A combined QM/MM approach to protein− ligand interactions: polarization effects of the HIV-1 protease on selected high affinity inhibitors
C Hensen, JC Hermann, K Nam, S Ma, J Gao, HD Höltje
Journal of medicinal chemistry 47 (27), 6673-6680, 2004
1412004
Quantum mechanical/molecular mechanical simulation study of the mechanism of hairpin ribozyme catalysis
K Nam, J Gao, DM York
Journal of the American Chemical Society 130 (14), 4680-4691, 2008
1022008
Dynamics of an enzymatic substitution reaction in haloalkane dehalogenase
K Nam, X Prat-Resina, M Garcia-Viloca, LS Devi-Kesavan, J Gao
Journal of the American Chemical Society 126 (5), 1369-1376, 2004
822004
Unsuspected pathway of the allosteric transition in hemoglobin
S Fischer, KW Olsen, K Nam, M Karplus
Proceedings of the National Academy of Sciences 108 (14), 5608-5613, 2011
762011
Machine-learning-assisted free energy simulation of solution-phase and enzyme reactions
X Pan, J Yang, R Van, E Epifanovsky, J Ho, J Huang, J Pu, Y Mei, K Nam, ...
Journal of chemical theory and computation 17 (9), 5745-5758, 2021
722021
Transition state stabilization and α-amino carbon acidity in alanine racemase
DT Major, K Nam, J Gao
Journal of the American Chemical Society 128 (25), 8114-8115, 2006
712006
Enforced presentation of an extrahelical guanine to the lesion recognition pocket of human 8-oxoguanine glycosylase, hOGG1
CM Crenshaw, K Nam, K Oo, PS Kutchukian, BR Bowman, M Karplus, ...
Journal of Biological Chemistry 287 (30), 24916-24928, 2012
672012
Trapping the ATP binding state leads to a detailed understanding of the F1-ATPase mechanism
K Nam, J Pu, M Karplus
Proceedings of the National Academy of Sciences 111 (50), 17851-17856, 2014
622014
The spontaneous replication error and the mismatch discrimination mechanisms of human DNA polymerase β
MC Koag, K Nam, S Lee
Nucleic acids research 42 (17), 11233-11245, 2014
612014
Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM
Y Qi, MC Spong, K Nam, M Karplus, GL Verdine
Journal of biological chemistry 285 (2), 1468-1478, 2010
572010
Electrostatic interactions in the hairpin ribozyme account for the majority of the rate acceleration without chemical participation by nucleobases
K Nam, J Gao, DM York
Rna 14 (8), 1501-1507, 2008
552008
Thermodynamic stability of mercury (II) complexes formed with environmentally relevant low-molecular-mass thiols studied by competing ligand exchange and density functional theory
V Liem-Nguyen, U Skyllberg, K Nam, E Björn
Environmental Chemistry 14 (4), 243-253, 2017
482017
Rapid convergence of energy and free energy profiles with quantum mechanical size in quantum mechanical–molecular mechanical simulations of proton transfer in DNA
S Das, K Nam, DT Major
Journal of chemical theory and computation 14 (3), 1695-1705, 2018
462018
Solvent and protein effects on the vibrational frequency shift and energy relaxation of the azide ligand in carbonic anhydrase
M Garcia-Viloca, K Nam, C Alhambra, J Gao
The Journal of Physical Chemistry B 108 (35), 13501-13512, 2004
422004
Strandwise translocation of a DNA glycosylase on undamaged DNA
Y Qi, K Nam, MC Spong, A Banerjee, RJ Sung, M Zhang, M Karplus, ...
Proceedings of the National Academy of Sciences 109 (4), 1086-1091, 2012
382012
Catalytic hydrogen atom transfer from hydrosilanes to vinylarenes for hydrosilylation and polymerization
P Asgari, Y Hua, A Bokka, C Thiamsiri, W Prasitwatcharakorn, A Karedath, ...
Nature catalysis 2 (2), 164-173, 2019
372019
The system can't perform the operation now. Try again later.
Articles 1–20