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Thomas E. Cheatham, III
Thomas E. Cheatham, III
Professor of Medicinal Chemistry; Director Research Computing; University of Utah
Verified email at utah.edu - Homepage
Title
Cited by
Cited by
Year
The Amber biomolecular simulation programs
DA Case, TE Cheatham III, T Darden, H Gohlke, R Luo, KM Merz Jr, ...
Journal of computational chemistry 26 (16), 1668-1688, 2005
25554*2005
Amber 10
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, 2008
12226*2008
AMBER 4.1
DA Case, JW Caldwell, WS Ross, TE Cheatham III, DM Ferguson, ...
Department of Pharmaceutical Chemistry, University of California: San …, 1995
9039*1995
PTRAJ and CPPTRAJ: software for processing and analysis of molecular dynamics trajectory data
DR Roe, TE Cheatham III
Journal of chemical theory and computation 9 (7), 3084-3095, 2013
55682013
Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models
PA Kollman, I Massova, C Reyes, B Kuhn, S Huo, L Chong, M Lee, T Lee, ...
Accounts of chemical research 33 (12), 889-897, 2000
49512000
AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and …
DA Pearlman, DA Case, JW Caldwell, WS Ross, TE Cheatham III, ...
Computer Physics Communications 91 (1-3), 1-41, 1995
37561995
Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations
IS Joung, TE Cheatham III
The journal of physical chemistry B 112 (30), 9020-9041, 2008
32082008
Refinement of the AMBER force field for nucleic acids: improving the description of α/γ conformers
A Pérez, I Marchán, D Svozil, J Sponer, TE Cheatham, CA Laughton, ...
Biophysical journal 92 (11), 3817-3829, 2007
23562007
Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate− DNA helices
J Srinivasan, TE Cheatham, P Cieplak, PA Kollman, DA Case
Journal of the American Chemical Society 120 (37), 9401-9409, 1998
18681998
A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat.
TE Cheatham 3rd, P Cieplak, PA Kollman
Journal of biomolecular structure & dynamics 16 (4), 845, 1999
10901999
Molecular dynamics simulations on solvated biomolecular systems: the particle mesh Ewald method leads to stable trajectories of DNA, RNA, and proteins
TEIII Cheatham, JL Miller, T Fox, TA Darden, PA Kollman
Journal of the American Chemical Society 117 (14), 4193-4194, 1995
9871995
Refinement of the Cornell et al. nucleic acids force field based on reference quantum chemical calculations of glycosidic torsion profiles
M Zgarbová, M Otyepka, J Sponer, A Mladek, P Banas, TE Cheatham III, ...
Journal of chemical theory and computation 7 (9), 2886-2902, 2011
9292011
Clustering molecular dynamics trajectories: 1. Characterizing the performance of different clustering algorithms
J Shao, SW Tanner, N Thompson, TE Cheatham
Journal of chemical theory and computation 3 (6), 2312-2334, 2007
8732007
AMBER 4.1
DA Pearlman, DA Case, JW Caldwell, WS Ross, TE Cheatham III, ...
University of California, San Francisco 45, 1995
7211995
Molecular dynamics simulations of the dynamic and energetic properties of alkali and halide ions using water-model-specific ion parameters
IS Joung, TE Cheatham III
The Journal of Physical Chemistry B 113 (40), 13279-13290, 2009
5642009
AMBER 10; University of California: San Francisco, 2008
DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ...
Google Scholar There is no corresponding record for this reference, 2008
5282008
The flying ice cube: velocity rescaling in molecular dynamics leads to violation of energy equipartition
SC Harvey, RKZ Tan, TE Cheatham III
Journal of computational chemistry 19 (7), 726-740, 1998
4701998
Encyclopedia of computational chemistry
PR Schleyer
(No Title), 1998
4651998
Refinement of the sugar–phosphate backbone torsion beta for AMBER force fields improves the description of Z-and B-DNA
M Zgarbová, J Sponer, M Otyepka, TE Cheatham III, R Galindo-Murillo, ...
Journal of chemical theory and computation 11 (12), 5723-5736, 2015
4502015
Molecular dynamics simulation of nucleic acids
PA Kollman, TE Cheatham III
Annu. Rev. Phys. Chem 51, 435-471, 2000
446*2000
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