Pilar Cossio
Pilar Cossio
Flatiron Institute
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Cited by
Cited by
The molecular mechanism of substrate engagement and immunosuppressant inhibition of calcineurin
S Grigoriu, R Bond, P Cossio, JA Chen, N Ly, G Hummer, R Page, ...
PLoS biology 11 (2), e1001492, 2013
Exponential consensus ranking improves the outcome in docking and receptor ensemble docking
K Palacio-Rodríguez, I Lans, CN Cavasotto, P Cossio
Scientific reports 9 (1), 5142, 2019
On artifacts in single-molecule force spectroscopy
P Cossio, G Hummer, A Szabo
Proceedings of the National Academy of Sciences 112 (46), 14248-14253, 2015
Exploring the universe of protein structures beyond the Protein Data Bank
P Cossio, A Trovato, F Pietrucci, F Seno, A Maritan, A Laio
PLoS computational biology 6 (11), e1000957, 2010
Protein folding and ligand-enzyme binding from bias-exchange metadynamics simulations
F Baftizadeh, P Cossio, F Pietrucci, A Laio
Current Physical Chemistry 2 (1), 79-91, 2012
Bayesian analysis of individual electron microscopy images: Towards structures of dynamic and heterogeneous biomolecular assemblies
P Cossio, G Hummer
Journal of structural biology 184 (3), 427-437, 2013
A simple and efficient statistical potential for scoring ensembles of protein structures
P Cossio, D Granata, A Laio, F Seno, A Trovato
Scientific Reports 2 (1), 351, 2012
Transition paths in single-molecule force spectroscopy
P Cossio, G Hummer, A Szabo
The Journal of chemical physics 148 (12), 2018
Optimizing the performance of bias-exchange metadynamics: folding a 48-residue LysM domain using a coarse-grained model
P Cossio, F Marinelli, A Laio, F Pietrucci
The Journal of Physical Chemistry B 114 (9), 3259-3265, 2010
Which similarity measure is better for analyzing protein structures in a molecular dynamics trajectory?
P Cossio, A Laio, F Pietrucci
Physical Chemistry Chemical Physics 13 (22), 10421-10425, 2011
Predicting the affinity of peptides to major histocompatibility complex class II by scoring molecular dynamics simulations
R Ochoa, A Laio, P Cossio
Journal of Chemical Information and Modeling 59 (8), 3464-3473, 2019
A Bayesian approach to extracting free-energy profiles from cryo-electron microscopy experiments
J Giraldo-Barreto, S Ortiz, EH Thiede, K Palacio-Rodriguez, B Carpenter, ...
Scientific reports 11 (1), 13657, 2021
BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images
P Cossio, D Rohr, F Baruffa, M Rampp, V Lindenstruth, G Hummer
Computer Physics Communications 210, 163-171, 2017
Kinetic ductility and force-spike resistance of proteins from single-molecule force spectroscopy
P Cossio, G Hummer, A Szabo
Biophysical journal 111 (4), 832-840, 2016
Conformations of the Huntingtin N-term in aqueous solution from atomistic simulations
G Rossetti, P Cossio, A Laio, P Carloni
FEBS letters 585 (19), 3086-3089, 2011
Critical behavior of ferromagnetic Ising thin films
P Cossio, J Mazo-Zuluaga, J Restrepo
Physica B: Condensed Matter 384 (1-2), 227-229, 2006
Discovery of antimicrobial compounds targeting bacterial type FAD synthetases
M Sebastián, E Anoz-Carbonell, B Gracia, P Cossio, JA Aínsa, I Lans, ...
Journal of enzyme inhibition and medicinal chemistry 33 (1), 241-254, 2018
Assessing the capability of in silico mutation protocols for predicting the finite temperature conformation of amino acids
R Ochoa, MA Soler, A Laio, P Cossio
Physical Chemistry Chemical Physics 20 (40), 25901-25909, 2018
Likelihood-based structural analysis of electron microscopy images
P Cossio, G Hummer
Current opinion in structural biology 49, 162-168, 2018
BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures
E Sarti, S Zamuner, P Cossio, A Laio, F Seno, A Trovato
Computer Physics Communications 184 (12), 2860-2865, 2013
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