Simon Roux

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Matthew B SullivanProfessor, Ohio State University / Founding Director, Center of Microbiome SciencePatvirtintas el. paštas osu.edu
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryPatvirtintas el. paštas lbl.gov
Benjamin BolducThe Ohio State UniversityPatvirtintas el. paštas osu.edu
François EnaultMaître de conférencePatvirtintas el. paštas univ-bpclermont.fr
Tanja WoykeDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Mart KrupovicHead of the Archaeal Virology Unit, Institut PasteurPatvirtintas el. paštas pasteur.fr
Stephen NayfachProfluent BioPatvirtintas el. paštas profluent.bio
Natalia IvanovaDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Didier DEBROASUCAPatvirtintas el. paštas uca.fr
Frederik SchulzResearch Scientist at DOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Kelly C. WrightonColorado State UniversityPatvirtintas el. paštas colostate.edu
Gareth (Gary) TrublStaff Scientist at Lawrence Livermore National LaboratoryPatvirtintas el. paštas llnl.gov
Ho Bin JangSenior Researcher at KVRI, Institute for Basic SciencePatvirtintas el. paštas ibs.re.kr
Natalie SolonenkoOhio State UniversityPatvirtintas el. paštas osu.edu
Rebecca A. DalyScience Strategy & Operations Lead, Soil Health, SyngentaPatvirtintas el. paštas syngenta.com
Neha J VargheseDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Joanne B. EmersonAssociate Professor, University of California, DavisPatvirtintas el. paštas ucdavis.edu
TBK ReddyLawrence Berkeley National LaboratoryPatvirtintas el. paštas lbl.gov
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Theoretical Biology and BioinformaticsPatvirtintas el. paštas uni-jena.de

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Simon Roux

DOE Joint Genome Institute

Patvirtintas el. paštas lbl.gov - Pagrindinis puslapis

viral diversity virus evolution viruses of microbes metagenomics bioinformatics


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ... Microbiome 5 (1), 1-16, 2017	1145	2017
VirSorter: mining viral signal from microbial genomic data S Roux, F Enault, BL Hurwitz, MB Sullivan PeerJ 3, e985, 2015	955*	2015
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	827	2015
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	664	2016
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ... Nature, 2016	655	2016
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	648	2015
CheckV assesses the quality and completeness of metagenome-assembled viral genomes S Nayfach, AP Camargo, F Schulz, E Eloe-Fadrosh, S Roux, NC Kyrpides Nature biotechnology 39 (5), 578-585, 2021	552	2021
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019	546	2019
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks H Bin Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ... Nature biotechnology 37 (6), 632-639, 2019	526	2019
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	481	2021
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes S Roux, SJ Hallam, T Woyke, MB Sullivan elife 4, e08490, 2015	427	2015
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ... Microbiome 9, 1-13, 2021	408*	2021
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	382	2019
DRAM for distilling microbial metabolism to automate the curation of microbiome function M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ... Nucleic acids research 48 (16), 8883-8900, 2020	346	2020
Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018	338	2018
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ... Nucleic acids research 49 (D1), D751-D763, 2021	328	2021
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses F Enault, A Briet, L Bouteille, S Roux, MB Sullivan, MA Petit The ISME journal 11 (1), 237-247, 2017	315	2017
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019	254	2019
Assessing the diversity and specificity of two freshwater viral communities through metagenomics S Roux, F Enault, A Robin, V Ravet, S Personnic, S Theil, J Colombet, ... PLoS One 7 (3), e33641, 2012	247	2012
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis S Roux, J Tournayre, A Mahul, D Debroas, F Enault BMC bioinformatics 15 (1), 1-12, 2014	245	2014

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