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Akbar Ali, Ph.D.
Akbar Ali, Ph.D.
Associate Professor of Biochemistry & Molecular Pharmacology, University of Massachusetts Medical
Verified email at umassmed.edu - Homepage
Title
Cited by
Cited by
Year
Visualizing a correlation between siRNA localization, cellular uptake, and RNAi in living cells
YL Chiu, A Ali, C Chu, H Cao, TM Rana
Chemistry & biology 11 (8), 1165-1175, 2004
5032004
The molecular basis of drug resistance against hepatitis C virus NS3/4A protease inhibitors
KP Romano, A Ali, C Aydin, D Soumana, A Özen, LM Deveau, C Silver, ...
PLoS pathogens 8 (7), e1002832, 2012
2472012
Small-molecule inhibition of HIV-1 Vif
R Nathans, H Cao, N Sharova, A Ali, M Sharkey, R Stranska, ...
Nature biotechnology 26 (10), 1187-1192, 2008
2442008
Drug resistance against HCV NS3/4A inhibitors is defined by the balance of substrate recognition versus inhibitor binding
KP Romano, A Ali, WE Royer, CA Schiffer
Proceedings of the National Academy of Sciences 107 (49), 20986-20991, 2010
2162010
Molecular basis for drug resistance in HIV-1 protease
A Ali, RM Bandaranayake, Y Cai, NM King, M Kolli, S Mittal, JF Murzycki, ...
Viruses 2 (11), 2509-2535, 2010
1732010
HIV-1 protease inhibitors from inverse design in the substrate envelope exhibit subnanomolar binding to drug-resistant variants
MD Altman, A Ali, GSK Kumar Reddy, MNL Nalam, SG Anjum, H Cao, ...
Journal of the American Chemical Society 130 (19), 6099-6113, 2008
1432008
First-in-class small molecule inhibitors of the single-strand DNA cytosine deaminase APOBEC3G
M Li, SMD Shandilya, MA Carpenter, A Rathore, WL Brown, AL Perkins, ...
ACS chemical biology 7 (3), 506-517, 2012
1412012
Evaluating the substrate-envelope hypothesis: structural analysis of novel HIV-1 protease inhibitors designed to be robust against drug resistance
MNL Nalam, A Ali, MD Altman, GSKK Reddy, S Chellappan, V Kairys, ...
Journal of Virology 84 (10), 5368-5378, 2010
1342010
Discovery of HIV-1 Protease Inhibitors with Picomolar Affinities Incorporating N-Aryl-oxazolidinone-5-carboxamides as Novel P2 Ligands
A Ali, GSKK Reddy, H Cao, SG Anjum, MNL Nalam, CA Schiffer, TM Rana
Journal of medicinal chemistry 49 (25), 7342-7356, 2006
1332006
P-TEFb regulation of transcription termination factor Xrn2 revealed by a chemical genetic screen for Cdk9 substrates
M Sansó, RS Levin, JJ Lipp, VYF Wang, AK Greifenberg, EM Quezada, ...
Genes & development 30 (1), 117-131, 2016
1292016
Chemical screening identifies filastatin, a small molecule inhibitor of Candida albicans adhesion, morphogenesis, and pathogenesis
A Fazly, C Jain, AC Dehner, L Issi, EA Lilly, A Ali, H Cao, PL Fidel Jr, ...
Proceedings of the National Academy of Sciences 110 (33), 13594-13599, 2013
1192013
Discovery of a small molecule Tat-trans-activation-responsive RNA antagonist that potently inhibits human immunodeficiency virus-1 replication
S Hwang, N Tamilarasu, K Kibler, H Cao, A Ali, YH Ping, KT Jeang, ...
Journal of Biological Chemistry 278 (40), 39092-39103, 2003
1032003
Crystal Structure of SARS-CoV-2 Main Protease in Complex with the Non-Covalent Inhibitor ML188
GJ Lockbaum, AC Reyes, JM Lee, R Tilvawala, EA Nalivaika, A Ali, ...
Viruses 13 (2), 174, 2021
992021
Design and Synthesis of HIV-1 Protease Inhibitors Incorporating Oxazolidinones as P2/P2 ‘Ligands in Pseudosymmetric Dipeptide Isosteres
GSKK Reddy, A Ali, MNL Nalam, SG Anjum, H Cao, RS Nathans, ...
Journal of medicinal chemistry 50 (18), 4316-4328, 2007
772007
Design of mutation‐resistant HIV protease inhibitors with the substrate envelope hypothesis
S Chellappan, GS Kiran Kumar Reddy, A Ali, MNL Nalam, SG Anjum, ...
Chemical biology & drug design 69 (5), 298-313, 2007
732007
Evaluating the role of macrocycles in the susceptibility of hepatitis C virus NS3/4A protease inhibitors to drug resistance
A Ali, C Aydin, R Gildemeister, KP Romano, H Cao, A Özen, D Soumana, ...
ACS chemical biology 8 (7), 1469-1478, 2013
712013
Structure-based design, synthesis, and structure− activity relationship studies of HIV-1 protease inhibitors incorporating phenyloxazolidinones
A Ali, GSKK Reddy, MNL Nalam, SG Anjum, H Cao, CA Schiffer, TM Rana
Journal of medicinal chemistry 53 (21), 7699-7708, 2010
682010
Molecular and dynamic mechanism underlying drug resistance in genotype 3 hepatitis C NS3/4A protease
DI Soumana, N Kurt Yilmaz, A Ali, KL Prachanronarong, CA Schiffer
Journal of the American Chemical Society 138 (36), 11850-11859, 2016
672016
Substrate envelope-designed potent HIV-1 protease inhibitors to avoid drug resistance
MNL Nalam, A Ali, GSKK Reddy, H Cao, SG Anjum, MD Altman, ...
Chemistry & biology 20 (9), 1116-1124, 2013
662013
Structural analysis of asunaprevir resistance in HCV NS3/4A protease
DI Soumana, A Ali, CA Schiffer
ACS chemical biology 9 (11), 2485-2490, 2014
642014
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