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Vanja Stojkovic
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Effects of the donor–acceptor distance and dynamics on hydride tunneling in the dihydrofolate reductase catalyzed reaction
V Stojković, LL Perissinotti, D Willmer, SJ Benkovic, A Kohen
Journal of the American Chemical Society 134 (3), 1738-1745, 2012
1362012
cfr(B), cfr(C), and a New cfr-Like Gene, cfr(E), in Clostridium difficile Strains Recovered across Latin America
V Stojković, MF Ulate, F Hidalgo-Villeda, E Aguilar, C Monge-Cascante, ...
Antimicrobial agents and chemotherapy 64 (1), 10.1128/aac. 01074-19, 2019
512019
Preservation of protein dynamics in dihydrofolate reductase evolution
K Francis, V Stojković, A Kohen
Journal of Biological Chemistry 288 (50), 35961-35968, 2013
512013
Antibiotic resistance evolved via inactivation of a ribosomal RNA methylating enzyme
V Stojković, L Noda-Garcia, DS Tawfik, DG Fujimori
Nucleic acids research 44 (18), 8897-8907, 2016
462016
The effect of active-site isoleucine to alanine mutation on the DHFR catalyzed hydride-transfer
V Stojković, LL Perissinotti, J Lee, SJ Benkovic, A Kohen
Chemical communications 46 (47), 8974-8976, 2010
422010
Enzymatic H transfers: Quantum tunneling and coupled motion from kinetic isotope effect studies
V Stojković, A Kohen
Israel Journal of Chemistry 49 (2), 163-173, 2009
372009
Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics
K Tsai, V Stojković, DJ Lee, ID Young, T Szal, D Klepacki, ...
Nature structural & molecular biology 29 (2), 162-171, 2022
282022
Radical SAM-Mediated Methylation of Ribosomal RNA
V Stojković, DG Fujimori
Methods in Enzymology 560, 355-376, 2015
252015
Mutations in RNA methylating enzymes in disease
V Stojković, DG Fujimori
Current opinion in chemical biology 41, 20-27, 2017
222017
Free energy simulations of active-site mutants of dihydrofolate reductase
D Doron, V Stojkovic, L Gakhar, A Vardi-Kilshtain, A Kohen, DT Major
The Journal of Physical Chemistry B 119 (3), 906-916, 2015
222015
Assessment of the nucleotide modifications in the high-resolution cryo-electron microscopy structure of the Escherichia coli 50S subunit
V Stojković, AG Myasnikov, ID Young, A Frost, JS Fraser, DG Fujimori
Nucleic acids research 48 (5), 2723-2732, 2020
212020
Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance
K Tsai, V Stojković, L Noda-Garcia, ID Young, AG Myasnikov, J Kleinman, ...
Elife 11, e70017, 2022
112022
miCLIP-MaPseq, a substrate identification approach for radical SAM RNA methylating enzymes
V Stojković, T Chu, G Therizols, DE Weinberg, DG Fujimori
Journal of the American Chemical Society 140 (23), 7135-7143, 2018
92018
Synthesis of radiolabeled nicotinamide cofactors from labeled pyridines: versatile probes for enzyme kinetics
A Sen, V Stojković, A Kohen
Analytical biochemistry 430 (2), 123-129, 2012
82012
Encyclopedia of Analytical Chemistry
A Kohen, D Roston, V Stojković, Z Wang
82011
Kinetic isotope effects in enzymes
A Kohen, D Roston, V Stojković, Z Wang
Encyclopedia of Analytical Chemistry: Applications, Theory and Instrumentation, 2006
72006
miCLIP-MaPseq identifies substrates of radical SAM RNA-methylating enzyme using mechanistic cross-linking and mismatch profiling
V Stojković, DE Weinberg, DG Fujimori
RNA Modifications: Methods and Protocols, 105-122, 2021
22021
High-resolution cryo-electron microscopy structure of the Escherichia coli 50S subunit and validation of nucleotide modifications
V Stojković, AG Myasnikov, ID Young, A Frost, JS Fraser, DG Fujimori
bioRxiv, 695429, 2019
2019
Contribution of active site dynamics to enzyme catalysis: study on a series of mutants of dihydrofolate reductase
V Stojkovic
University of Iowa, 2012
2012
Correlated effects of the donor acceptor distance and its fluctuation on hydride transfer in the Dihydrofolate reductase catalyzed reaction
V Stojkovic, LL Perissinotti, SJ Benkovic, A Kohen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 242, 2011
2011
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Articles 1–20