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Danial Sabri Dashti
Danial Sabri Dashti
Machine Learning Scientist at Amazon
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Title
Cited by
Cited by
Year
Computing alchemical free energy differences with Hamiltonian replica exchange molecular dynamics (H-REMD) simulations
Y Meng, D Sabri Dashti, AE Roitberg
Journal of chemical theory and computation 7 (9), 2721-2727, 2011
1052011
pH-Replica Exchange Molecular Dynamics in Proteins Using a Discrete Protonation Method
D Sabri Dashti, Y Meng, AE Roitberg
The Journal of Physical Chemistry B, 2012
492012
Optimization of umbrella sampling replica exchange molecular dynamics by replica positioning
D Sabri Dashti, AE Roitberg
Journal of chemical theory and computation 9 (11), 4692-4699, 2013
472013
Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores
ML Benson, JC Faver, MN Ucisik, DS Dashti, Z Zheng, KM Merz
Journal of computer-aided molecular design 26, 647-659, 2012
252012
Pairwise additivity of energy components in protein-ligand binding: The HIV II protease-indinavir case
MN Ucisik, DS Dashti, JC Faver, KM Merz
The Journal of chemical physics 135 (8), 2011
242011
Effect of Ce substitution in RuGd2–xCexSr2Cu2O10–δ (Ru‐1222)
H Hadipour, D Sabri, M Mirzadeh, M Akhavan
physica status solidi (c) 3 (9), 2982-2985, 2006
82006
Electrical and magnetic properties of RuGd1.6Ce0.4Sr2Cu2O10–δ
D Sabri, H Hadipour, M Mirzadeh, M Akhavan
physica status solidi c 3 (9), 2964-2967, 2006
62006
Optimization of constant pH replica exchange molecular dynamics method
D Sabri Dashti, A Roitberg
APS March Meeting Abstracts 2014, F19. 004, 2014
2014
Estimation and Optimization of the Exchange Acceptance in Umbrella Sampling Replica Exchange Molecular Dynamics
DS Dashti, A Roitberg
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 245, 2013
2013
Developing and Optimizing the Replica Exchange-Based Free Energy Methods
DS Dashti
University of Florida, 2013
2013
Calculating the shift in pKa of the position 66 for an Staphylococcal nuclease mutant with the Replica Exchange Free Energy Perturbation method
D Sabri Dashti, A Roitberg
APS March Meeting Abstracts 2011, J39. 012, 2011
2011
A statistical estimation of the precision of reweighting-based simulations
D Sabri Dashti, AE Roitberg
APS March Meeting Abstracts 2010, Z25. 005, 2010
2010
Electrical and magnetic properties of RuGd {sub 1.6} Ce {sub 0.4} Sr {sub 2} Cu {sub 2} O {sub 10-{delta}}
D Sabri, H Hadipour, M Mirzadeh, M Akhavan
Physica Status Solidi C 3, 2006
2006
Effect of Ce substitution in RuGd {sub 2-x} Ce {sub x} Sr {sub 2} Cu {sub 2} O {sub 10-{delta}}(Ru-1222)
H Hadipour, D Sabri, M Mirzadeh, M Akhavan
Physica Status Solidi C 3, 2006
2006
Effect of Ce substitution in RuGd {sub 2-x} Ce {sub x} Sr {sub 2} Cu {sub 2} O {sub 10-{delta}}(Ru-1222); Asar-e jaygozini-e Ce rooye khavas-e abar resanayee-e RuGd {sub 2-x …
H Hadipour, D Sabri, M Akhavan
2006
Electrical properties of Ru (Gd {sub 2-x} Ce {sub x}) Sr {sub 2} Cu {sub 2} O {sub 10-{delta}} in normal state; Khavase electriki-ye Ru (Gd {sub 2-x} Ce {sub x}) Sr {sub 2} Cu …
D Sabri, H Hadipour, M Akhavan
2006
Electrical properties of Ru (Gd 2-x Ce x) Sr 2 Cu 2 O 10-δ in normal state
D Sabri, H Hadipour, M Akhavan
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