| The IL-10/STAT3-mediated anti-inflammatory response: recent developments and future challenges AP Hutchins, D Diez, D Miranda-Saavedra Briefings in functional genomics 12 (6), 489-498, 2013 | 382 | 2013 |
| Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ... Genome biology 14 (2), 1-15, 2013 | 303 | 2013 |
| Oct4 switches partnering from Sox2 to Sox17 to reinterpret the enhancer code and specify endoderm I Aksoy, R Jauch, J Chen, M Dyla, U Divakar, GK Bogu, R Teo, ... The EMBO journal 32 (7), 938-953, 2013 | 194 | 2013 |
| Chromatin accessibility dynamics during iPSC reprogramming D Li, J Liu, X Yang, C Zhou, J Guo, C Wu, Y Qin, L Guo, J He, S Yu, H Liu, ... Cell stem cell 21 (6), 819-833. e6, 2017 | 180 | 2017 |
| The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters X Bao, H Wu, X Zhu, X Guo, AP Hutchins, Z Luo, H Song, Y Chen, K Lai, ... Cell research 25 (1), 80-92, 2015 | 176 | 2015 |
| Capturing the interactome of newly transcribed RNA X Bao, X Guo, M Yin, M Tariq, Y Lai, S Kanwal, J Zhou, N Li, Y Lv, ... Nature methods 15 (3), 213-220, 2018 | 148 | 2018 |
| Genome-wide analysis of STAT3 binding in vivo predicts effectors of the anti-inflammatory response in macrophages AP Hutchins, S Poulain, D Miranda-Saavedra Blood 119 (13), e110-e119, 2012 | 128 | 2012 |
| The oncogene c-Jun impedes somatic cell reprogramming J Liu, Q Han, T Peng, M Peng, B Wei, D Li, X Wang, S Yu, J Yang, S Cao, ... Nature cell biology 17 (7), 856-867, 2015 | 124 | 2015 |
| A sequential EMT-MET mechanism drives the differentiation of human embryonic stem cells towards hepatocytes Q Li, AP Hutchins, Y Chen, S Li, Y Shan, B Liao, D Zheng, X Shi, Y Li, ... Nature communications 8 (1), 15166, 2017 | 111 | 2017 |
| Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA R Jauch, I Aksoy, AP Hutchins, CKL Ng, XF Tian, J Chen, P Palasingam, ... Stem Cells 29 (6), 940-951, 2011 | 101 | 2011 |
| Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells J He, X Fu, M Zhang, F He, W Li, MM Abdul, J Zhou, L Sun, C Chang, Y Li, ... Nature Communications 10 (1), 34, 2019 | 97 | 2019 |
| RNA Helicase DDX5 Inhibits Reprogramming to Pluripotency by miRNA-based repression of RYBP and its PRC1-dependent and-independent functions H Li, P Lai, J Jia, Y Song, Q Xia, K Huang, N He, W Ping, J Chen, Z Yang, ... Cell stem cell 20 (4), 462-477. e6, 2017 | 90 | 2017 |
| Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions AP Hutchins, D Diez, Y Takahashi, S Ahmad, R Jauch, ML Tremblay, ... Nucleic acids research 41 (4), 2155-2170, 2013 | 87 | 2013 |
| The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes AP Hutchins, S Liu, D Diez, D Miranda-Saavedra Molecular biology and evolution 30 (5), 1172-1187, 2013 | 82 | 2013 |
| Resolving Cell Fate Decisions during Somatic Cell Reprogramming by Single-Cell RNA-Seq L Guo, L Lin, X Wang, M Gao, S Cao, Y Mai, F Wu, J Kuang, H Liu, J Yang, ... Molecular cell 73 (4), 815-829. e7, 2019 | 72 | 2019 |
| Transcriptional pause release is a rate-limiting step for somatic cell reprogramming L Liu, Y Xu, M He, M Zhang, F Cui, L Lu, M Yao, W Tian, C Benda, ... Cell Stem Cell 15 (5), 574-588, 2014 | 70 | 2014 |
| NCoR/SMRT co-repressors cooperate with c-MYC to create an epigenetic barrier to somatic cell reprogramming Q Zhuang, W Li, C Benda, Z Huang, T Ahmed, P Liu, X Guo, DP Ibañez, ... Nature Cell Biology, 1, 2018 | 68 | 2018 |
| Selective recruitment of proteins to 5′ cap complexes during the growth cycle in Arabidopsis MS Bush, AP Hutchins, AME Jones, MJ Naldrett, A Jarmolowski, ... The Plant Journal 59 (3), 400-412, 2009 | 67 | 2009 |
| Transposable elements at the center of the crossroads between embryogenesis, embryonic stem cells, reprogramming, and long non-coding RNAs AP Hutchins, D Pei Science bulletin 60 (20), 1722-1733, 2015 | 66 | 2015 |
| Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2 V Malik, LV Glaser, D Zimmer, S Velychko, M Weng, M Holzner, M Arend, ... Nature communications 10 (1), 3477, 2019 | 55 | 2019 |
Diego Miranda-Saavedradiego@ifrec.osaka-u.ac.jpVerified email at ifrec.osaka-u.ac.jp
