Alessandro M. Varani

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Michael ChandlerAdjunct Prof. University of Georgetown Medical Center (Ex-Senior Research Director, CNRS)Verified email at georgetown.edu
Danillo Oliveira AlvarengaUniversity of CopenhagenVerified email at bio.ku.dk
Marie-Anne Van SluysUniversidade de Sao PauloVerified email at usp.br
Patricia SiguiercnrsVerified email at univ-tlse3.fr
Saura Rodrigues da SilvaPost Doc researcher at Sao Paulo State University - UNESPVerified email at unesp.br
Vitor Fernandes Oliveira MirandaSao Paulo State University - UNESPVerified email at unesp.br
Jesus Aparecido FerroUniversidade Estadual Paulista/UNESP - Faculdade de Ciências Agrárias e Veterinárias da JaboticabalVerified email at fcav.unesp.br
Marli de Fátima FioreProfessor, Universidade de São PauloVerified email at cena.usp.br
Claudia Barros Monteiro-VitorelloAssociate Professor, University of São PauloVerified email at usp.br
Eliana Gertrudes de Macedo LemosProfessor Titular de Bioquimica da UNESPVerified email at fcav.unesp.br
Victor Satler PylroUniversidade Federal de Lavras - UFLAVerified email at ufla.br
Todd P MichaelSalk Institute for Biological StudiesVerified email at salk.edu
Rafael Marini FerreiraPós Doutorado, Departamento de Tecnologia, Universidade Estadual Paulista (UNESP)Verified email at fcav.unesp.br
Lucia Maria Carareto AlvesProfessor Bioquimica e Biologia Molecular, Universidade Estadual PaulistaVerified email at fcav.unesp.br
João Carlos SetubalProfessor of Bioinformatics, University of Sao PauloVerified email at iq.usp.br
Susu HEResearch Scientist at Dartmouth CollegeVerified email at dartmouth.edu
Maria Inês Tiraboschi FerroUniversidade Estadual Paulista - UNESPVerified email at fcav.unesp.br
Maria Lucia Carneiro VieiraProfessor Titular, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São PauloVerified email at usp.br
Camila Cesario FernandesAssistente de Suporte AcadêmicoVerified email at fcav.unesp.br
Nalvo F Almeida JrProfessor of Bioinformatics, Federal University of Mato Grosso do Sul, BrazilVerified email at facom.ufms.br

Alessandro M. Varani

UNESP - Sao Paulo State University

Verified email at unesp.br - Homepage

Genomics Bioinformatics Evolution Mobile Genetic Elements


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ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes AM Varani, P Siguier, E Gourbeyre, V Charneau, M Chandler Genome biology 12, 1-9, 2011	332	2011
Insertion Sequence IS26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition S He, AB Hickman, AM Varani, P Siguier, M Chandler, JP Dekker, F Dyda MBio 6 (3), 10.1128/mbio. 00762-15, 2015	267	2015
Everyman's guide to bacterial insertion sequences P Siguier, E Gourbeyre, A Varani, B Ton-Hoang, M Chandler Mobile DNA Iii, 555-590, 2015	232*	2015
Building the sugarcane genome for biotechnology and identifying evolutionary trends N De Setta, CB Monteiro-Vitorello, CJ Metcalfe, GMQ Cruz, LE Del Bem, ... BMC genomics 15, 1-18, 2014	141	2014
A Metagenomic Approach to Cyanobacterial Genomics DO Alvarenga, MF Fiore, AM Varani Frontiers in Microbiology, 2017	109	2017
The Family Bradyrhizobiaceae. U: The Prokaryotes: Alphaproteobacteria and Betaproteobacteria (Rosenberg E. I sur., Ur.) JA Marcondes De Souza, LM Carareto Alves, A de Mello Varani, ... Springer Verlag, Berlin, 2014	88*	2014
The Family Rhizobiaceae EGML Lucia Maria Carrareto Alves, Jackson Antônio Marcondes de Souza ... The Prokaryotes: Alphaproteobacteria and Betaproteobacteria, 419-437, 2014	84*	2014
Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle LN Lemos, JD Medeiros, F Dini‐Andreote, GR Fernandes, AM Varani, ... Molecular ecology 28 (18), 4259-4271, 2019	83	2019
The role of prophage in plant-pathogenic bacteria AM Varani, CB Monteiro-Vitorello, HI Nakaya, MA Van Sluys Annual review of phytopathology 51, 429-451, 2013	76	2013
Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments P Siguier, A Varani, J Perochon, M Chandler Mobile Genetic Elements: Protocols and Genomic Applications, 91-103, 2012	76	2012
The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in … LA Cauz-Santos, CF Munhoz, N Rodde, S Cauet, AA Santos, HA Penha, ... Frontiers in Plant Science 8, 334, 2017	75	2017
TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis CM Ross K, Varani AM, Snesrud E, Huang H, Alvarenga DO, Zhang J, Wu C, McGann P mBio 12 (Number 5), e02060-21, 2021	68*	2021
Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism WC Lima, ACM Paquola, AM Varani, MA Van Sluys, CFM Menck FEMS microbiology letters 281 (1), 87-97, 2008	68	2008
The IS6 family, a clinically important group of insertion sequences including IS26 A Varani, S He, P Siguier, K Ross, M Chandler Mobile Dna 12, 1-18, 2021	67	2021
Xylella and Xanthomonas Mobil'omics CB Monteiro-Vitorello, MC De Oliveira, MM Zerillo, AM Varani, E Civerolo, ... Omics: a journal of integrative biology 9 (2), 146-159, 2005	66	2005
Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation A de Mello Varani, RC Souza, HI Nakaya, WC de Lima, ... PLoS One 3 (12), e4059, 2008	63	2008
Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing JPF Fernanda Almeida , Amanda Aparecida Seribelli, Marta Inês Cazentini ... PLoS ONE 13 ((8)e0201882), 16, 2018	62*	2018
NAD biosynthesis evolution in bacteria: lateral gene transfer of kynurenine pathway in Xanthomonadales and Flavobacteriales WC Lima, AM Varani, CFM Menck Molecular biology and evolution 26 (2), 399-406, 2009	61	2009
Mechanisms of evolution in high-consequence drug resistance plasmids S He, M Chandler, AM Varani, AB Hickman, JP Dekker, F Dyda MBio 7 (6), 10.1128/mbio. 01987-16, 2016	58	2016
The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the … SR Silva, YCA Diaz, HA Penha, DG Pinheiro, CC Fernandes, ... PLoS One 11 (10), e0165176, 2016	57	2016

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