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Olga T. Schubert
Olga T. Schubert
Group Leader at Eawag, lecturer at ETH Zurich
Verified email at eawag.ch
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Cited by
Year
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
HL Röst, G Rosenberger, P Navarro, L Gillet, SM Miladinović, ...
Nature biotechnology 32 (3), 219-223, 2014
8092014
A repository of assays to quantify 10,000 human proteins by SWATH-MS
G Rosenberger, CC Koh, T Guo, HL Röst, P Kouvonen, BC Collins, ...
Scientific data 1 (1), 1-15, 2014
4342014
Building high-quality assay libraries for targeted analysis of SWATH MS data
OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ...
Nature protocols 10 (3), 426-441, 2015
3502015
Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis
T Cortes, OT Schubert, G Rose, KB Arnvig, I Comas, R Aebersold, ...
Cell reports 5 (4), 1121-1131, 2013
3272013
Quantitative proteomics: challenges and opportunities in basic and applied research
OT Schubert, HL Röst, BC Collins, G Rosenberger, R Aebersold
Nature protocols 12 (7), 1289-1294, 2017
2962017
The in silico human surfaceome
D Bausch-Fluck, U Goldmann, S Müller, M van Oostrum, M Müller, ...
Proceedings of the National Academy of Sciences 115 (46), E10988-E10997, 2018
2742018
Absolute proteome composition and dynamics during dormancy and resuscitation of Mycobacterium tuberculosis
OT Schubert, C Ludwig, M Kogadeeva, M Zimmermann, G Rosenberger, ...
Cell host & microbe 18 (1), 96-108, 2015
2262015
Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer
I Cima, R Schiess, P Wild, M Kaelin, P Schüffler, V Lange, P Picotti, ...
Proceedings of the National Academy of Sciences 108 (8), 3342-3347, 2011
2242011
The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis
OT Schubert, J Mouritsen, C Ludwig, HL Röst, G Rosenberger, PK Arthur, ...
Cell host & microbe 13 (5), 602-612, 2013
2072013
From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions
M Mori, Z Zhang, A Banaei‐Esfahani, JB Lalanne, H Okano, BC Collins, ...
Molecular systems biology 17 (5), e9536, 2021
892021
Breast cancer classification based on proteotypes obtained by SWATH mass spectrometry
P Bouchal, OT Schubert, J Faktor, L Capkova, H Imrichova, K Zoufalova, ...
Cell reports 28 (3), 832-843. e7, 2019
862019
A RanGTP-independent mechanism allows ribosomal protein nuclear import for ribosome assembly
S Schütz, U Fischer, M Altvater, P Nerurkar, C Peña, M Gerber, Y Chang, ...
Elife 3, e03473, 2014
742014
Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the …
KM Malone, K Rue-Albrecht, DA Magee, K Conlon, OT Schubert, ...
Microbial genomics 4 (3), e000163, 2018
642018
Systems-level proteomics of two ubiquitous leaf commensals reveals complementary adaptive traits for phyllosphere colonization
DB Müller, OT Schubert, H Röst, R Aebersold, JA Vorholt
Molecular & Cellular Proteomics 15 (10), 3256-3269, 2016
602016
Automated SWATH data analysis using targeted extraction of ion chromatograms
HL Röst, R Aebersold, OT Schubert
Proteomics, 289-307, 2017
522017
A Small RNA Encoded in the Rv2660c Locus of Mycobacterium tuberculosis Is Induced during Starvation and Infection
J Houghton, T Cortes, O Schubert, G Rose, A Rodgers, M De Ste Croix, ...
PloS one 8 (12), e80047, 2013
472013
Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival
T Cortes, OT Schubert, A Banaei-Esfahani, BC Collins, R Aebersold, ...
Scientific reports 7 (1), 8208, 2017
462017
Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97
KM Malone, D Farrell, TP Stuber, OT Schubert, R Aebersold, ...
Genome announcements 5 (14), 10.1128/genomea. 00157-17, 2017
462017
The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers
P Klingauf-Nerurkar, LC Gillet, D Portugal-Calisto, M Oborská-Oplová, ...
Elife 9, e52474, 2020
44*2020
Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis
R Großeholz, CC Koh, N Veith, T Fiedler, M Strauss, B Olivier, BC Collins, ...
NPJ systems biology and applications 2 (1), 1-9, 2016
312016
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