| SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ... Bioinformatics 35 (3), 462-469, 2018 | 278 | 2018 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 125 | 2019 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 100 | 2021 |
| QSAR analysis of blood–brain distribution: The influence of plasma and brain tissue binding K Lanevskij, J Dapkunas, L Juska, P Japertas, R Didziapetris Journal of pharmaceutical sciences 100 (6), 2147-2160, 2011 | 74 | 2011 |
| The PPI3D web server for searching, analyzing and modeling protein–protein interactions in the context of 3D structures J Dapkūnas, A Timinskas, K Olechnovič, M Margelevičius, R Dičiūnas, ... Bioinformatics 33 (6), 935-937, 2017 | 57 | 2017 |
| Trainable structure–activity relationship model for virtual screening of CYP3A4 inhibition R Didziapetris, J Dapkunas, A Sazonovas, P Japertas Journal of computer-aided molecular design 24 (11), 891-906, 2010 | 39 | 2010 |
| Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 36 | 2023 |
| Probabilistic prediction of the human CYP3A4 and CYP2D6 metabolism sites J Dapkunas, A Sazonovas, P Japertas Chemistry & biodiversity 6 (11), 2101-2106, 2009 | 22 | 2009 |
| Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction J Dapkūnas, K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 89 (12), 1834-1843, 2021 | 16 | 2021 |
| Inferring the microscopic surface energy of protein–protein interfaces from mutation data IH Moal, J Dapkūnas, J Fernández‐Recio Proteins: Structure, Function, and Bioinformatics 83 (4), 640-650, 2015 | 15 | 2015 |
| Structural modeling of protein complexes: Current capabilities and challenges J Dapkūnas, K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 87 (12), 1222-1232, 2019 | 14 | 2019 |
| Prediction of protein assemblies by structure sampling followed by interface‐focused scoring K Olechnovič, L Valančauskas, J Dapkūnas, Č Venclovas Proteins: Structure, Function, and Bioinformatics 91 (12), 1724-1733, 2023 | 11 | 2023 |
| Modeling of protein complexes in CAPRI Round 37 using template‐based approach combined with model selection J Dapkūnas, K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 86 (S1), 292-301, 2018 | 11 | 2018 |
| Mapping of Recognition Sites of Monoclonal Antibodies Responsible for the Inhibition of Pneumolysin Functional Activity I Kucinskaite-Kodze, M Simanavicius, J Dapkunas, M Pleckaityte, ... Biomolecules 10 (7), 1009, 2020 | 10 | 2020 |
| Template-Based Modeling of Protein Complexes Using the PPI3D Web Server J Dapkūnas, Č Venclovas Protein Structure Prediction, 139-155, 2020 | 7 | 2020 |
| Template‐based modeling of diverse protein interactions in CAPRI rounds 38‐45 J Dapkūnas, V Kairys, K Olechnovič, Č Venclovas Proteins: Structure, Function, and Bioinformatics 88 (8), 939-947, 2020 | 5 | 2020 |
| The COMER web server for protein analysis by homology J Dapkūnas, M Margelevičius Bioinformatics 39 (1), btac807, 2023 | 4 | 2023 |
| Exogenous interleukin-1α signaling negatively impacts acquired chemoresistance and alters cell adhesion molecule expression pattern in colorectal carcinoma cells HCT116 P Grigaitis, V Jonusiene, V Zitkute, J Dapkunas, D Dabkeviciene, ... Cytokine 114, 38-46, 2019 | 4 | 2019 |
| PIGN-Related Disease in Two Lithuanian Families: A Report of Two Novel Pathogenic Variants, Molecular and Clinical Characterisation E Siavrienė, Ž Maldžienė, V Mikštienė, G Petraitytė, T Rančelis, ... Medicina 58 (11), 1526, 2022 | 3 | 2022 |
| PPI3D: a web server for searching, analyzing and modeling protein–protein, protein–peptide and protein–nucleic acid interactions J Dapkūnas, A Timinskas, K Olechnovič, M Tomkuvienė, Č Venclovas Nucleic Acids Research, gkae278, 2024 | 1 | 2024 |
Česlovas VenclovasInstitute of Biotechnology, Life Sciences Center, Vilnius UniversityVerified email at bti.vu.lt
