Vincent Lacroix
Modelling and simulating generic RNA-Seq experiments with the flux simulator
T Griebel, B Zacher, P Ribeca, E Raineri, V Lacroix, R Guigó, M Sammeth
Nucleic acids research 40 (20), 10073-10083, 2012
Motif search in graphs: application to metabolic networks
V Lacroix, CG Fernandes, MF Sagot
IEEE/ACM transactions on computational biology and bioinformatics 3 (4), 360-368, 2006
An introduction to metabolic networks and their structural analysis
V Lacroix, L Cottret, P Thébault, MF Sagot
IEEE/ACM transactions on computational biology and bioinformatics 5 (4), 594-617, 2008
A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events
M Jaillard, L Lima, M Tournoud, P Mahé, A Van Belkum, V Lacroix, ...
PLoS genetics 14 (11), e1007758, 2018
Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy
F Freyermuth, F Rau, Y Kokunai, T Linke, C Sellier, M Nakamori, Y Kino, ...
Nature communications 7 (1), 11067, 2016
Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts
M Frenkel-Morgenstern, V Lacroix, I Ezkurdia, Y Levin, A Gabashvili, ...
Genome research 22 (7), 1231-1242, 2012
Modes and cuts in metabolic networks: Complexity and algorithms
V Acuna, F Chierichetti, V Lacroix, A Marchetti-Spaccamela, MF Sagot, ...
Biosystems 95 (1), 51-60, 2009
KIS SPLICE: de-novo calling alternative splicing events from RNA-seq data
GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ...
BMC bioinformatics 13, 1-12, 2012
Reference-free detection of isolated SNPs
R Uricaru, G Rizk, V Lacroix, E Quillery, O Plantard, R Chikhi, C Lemaitre, ...
Nucleic acids research 43 (2), e11-e11, 2015
Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
C Sessegolo, C Cruaud, C Da Silva, A Cologne, M Dubarry, T Derrien, ...
Scientific reports 9 (1), 14908, 2019
SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence
H Lopez-Maestre, L Brinza, C Marchet, J Kielbassa, S Bastien, ...
Nucleic Acids Research 44 (19), e148-e148, 2016
Exact transcriptome reconstruction from short sequence reads
V Lacroix, M Sammeth, R Guigo, A Bergeron
International Workshop on Algorithms in Bioinformatics, 50-63, 2008
Evidence for transcript networks composed of chimeric RNAs in human cells
S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ...
PLoS One 7 (1), e28213, 2012
Metabolic network visualization eliminating node redundance and preserving metabolic pathways
R Bourqui, L Cottret, V Lacroix, D Auber, P Mary, MF Sagot, F Jourdan
BMC systems biology 1, 1-19, 2007
ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data
M Frenkel-Morgenstern, A Gorohovski, V Lacroix, M Rogers, K Ibanez, ...
Nucleic acids research 41 (D1), D142-D151, 2012
Identifying SNPs without a reference genome by comparing raw reads
P Peterlongo, N Schnel, N Pisanti, MF Sagot, V Lacroix
String Processing and Information Retrieval: 17th International Symposium …, 2010
Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny
AS Véron, C Lemaitre, C Gautier, V Lacroix, MF Sagot
BMC genomics 12, 1-13, 2011
Advances in analyzing virus-induced alterations of host cell splicing
U Ashraf, C Benoit-Pilven, V Lacroix, V Navratil, N Naffakh
Trends in microbiology 27 (3), 268-281, 2019
New insights into minor splicing—a transcriptomic analysis of cells derived from TALS patients
A Cologne, C Benoit-Pilven, A Besson, A Putoux, A Campan-Fournier, ...
Rna 25 (9), 1130-1149, 2019
Identification of misexpressed genetic elements in hybrids between Drosophila-related species
H Lopez-Maestre, EAG Carnelossi, V Lacroix, N Burlet, B Mugat, ...
Scientific reports 7 (1), 40618, 2017
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Straipsniai 1–20