Michael Matthies
Michael Matthies
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Block copolymer micellization as a protection strategy for DNA origami
NP Agarwal, M Matthies, FN Gür, K Osada, TL Schmidt
Angewandte Chemie International Edition 56 (20), 5460-5464, 2017
Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation
E Poppleton, J Bohlin, M Matthies, S Sharma, F Zhang, P Šulc
Nucleic acids research 48 (12), e72-e72, 2020
TacoxDNA: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami
LR Antonio Suma, Erik Poppleton, Michael Matthies, Petr Šulc, Flavio Romano ...
Journal of Computational Chemistry, 2019
Design and synthesis of triangulated DNA origami trusses
M Matthies, NP Agarwal, TL Schmidt
Nano letters 16 (3), 2108-2113, 2016
Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView
J Bohlin, M Matthies, E Poppleton, J Procyk, A Mallya, H Yan, P Šulc
Nature protocols 17 (8), 1762-1788, 2022
Switchable reconfiguration of a seven-ring interlocked DNA catenane nanostructure
CH Lu, A Cecconello, XJ Qi, N Wu, SS Jester, M Famulok, M Matthies, ...
Nano Letters 15 (10), 7133-7137, 2015
DNA-encircled lipid bilayers
K Iric, M Subramanian, J Oertel, NP Agarwal, M Matthies, X Periole, ...
Nanoscale 10 (39), 18463-18467, 2018
Structural Transformation of Wireframe DNA Origami via DNA Polymerase Assisted Gap-Filling
NP Agarwal, M Matthies, B Joffroy, TL Schmidt
ACS nano 12 (3), 2546-2553, 2018
The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly
CR Simmons, T MacCulloch, M Krepl, M Matthies, A Buchberger, ...
Nature communications 13 (1), 3112, 2022
Triangulated wireframe structures assembled using single-stranded DNA tiles
M Matthies, NP Agarwal, E Poppleton, FM Joshi, P Sulc, TL Schmidt
Acs Nano 13 (2), 1839-1848, 2019
The oxDNA coarse-grained model as a tool to simulate DNA origami
JPK Doye, H Fowler, D Prešern, J Bohlin, L Rovigatti, F Romano, P Šulc, ...
DNA and RNA Origami: Methods and Protocols, 93-112, 2023
oxDNA: coarse-grained simulations of nucleic acids made simple
E Poppleton, M Matthies, D Mandal, F Romano, P Šulc, L Rovigatti
Journal of Open Source Software 8 (81), 4693, 2023
A simple solution to the problem of self-assembling cubic diamond crystals
L Rovigatti, J Russo, F Romano, M Matthies, L Kroc, P Šulc
Nanoscale 14 (38), 14268-14275, 2022
A self-regulating DNA rotaxane linear actuator driven by chemical energy
Z Yu, M Centola, J Valero, M Matthies, P Sulc, M Famulok
Journal of the American Chemical Society 143 (33), 13292-13298, 2021
Hairygami: Analysis of DNA Nanostructures' Conformational Change Driven by Functionalizable Overhangs
M Sample, H Liu, M Matthies, P Šulc
arXiv preprint arXiv:2302.09109, 2023
Inverse design of a pyrochlore lattice of DNA origami through model-driven experiments
H Liu, M Matthies, J Russo, L Rovigatti, RP Narayanan, T Diep, D McKeen, ...
Science 384 (6697), 776-781, 2024
Single-Molecule Force Spectroscopy of Toehold-Mediated Strand Displacement
A Walbrun, T Wang, M Matthies, P Šulc, FC Simmel, M Rief
bioRxiv, 2024.01. 16.575816, 2024
Coarse-Grained Simulations Of Dna And Rna Systems With Oxdna And Oxrna Models: Tutorial
ML Sample, M Matthies, P Šulc
2023 Winter Simulation Conference (WSC), 91-105, 2023
Coarse-grained simulations of DNA and RNA systems with oxDNA and oxRNA models: Introductory tutorial
M Matthies, M Sample, P Šulc
arXiv preprint arXiv:2308.01455, 2023
High-speed 3D DNA-PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography
GBM Wisna, D Sukhareva, J Zhao, D Satyabola, M Matthies, S Roy, ...
bioRxiv, 2023.08. 29.555281, 2023
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