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Peter Kerpedjiev
Peter Kerpedjiev
Senior Software Engineer, Amazon
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Cited by
Year
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
16992022
HiGlass: Web-based Visual Comparison And Exploration Of Genome Interaction Maps
P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ...
biorXiv, 121889, 2017
1158*2017
The 4D nucleome project
J Dekker, AS Belmont, M Guttman, VO Leshyk, JT Lis, S Lomvardas, ...
Nature 549 (7671), 219-226, 2017
6262017
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
P Kerpedjiev, S Hammer, IL Hofacker
Bioinformatics 31 (20), 3377-3379, 2015
4192015
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
Science 376 (6588), eabl4178, 2022
2402022
Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with Important Pathogenic Phenotypes
TH Jakobsen, MA Hansen, PŘ Jensen, L Hansen, L Riber, A Cockburn, ...
PloS one 8 (7), e68484, 2013
1052013
RIsearch2: suffix array-based large-scale prediction of RNA–RNA interactions and siRNA off-targets
F Alkan, A Wenzel, O Palasca, P Kerpedjiev, AF Rudebeck, PF Stadler, ...
Nucleic acids research 45 (8), e60-e60, 2017
882017
Predicting RNA 3D structure using a coarse-grain helix-centered model
P Kerpedjiev, CH Zu Siederdissen, IL Hofacker
Rna 21 (6), 1110-1121, 2015
852015
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data
SB Reiff, AJ Schroeder, K Kırlı, A Cosolo, C Bakker, L Mercado, S Lee, ...
Nature communications 13 (1), 2365, 2022
662022
HiNT: a computational method for detecting copy number variations and translocations from Hi-C data
S Wang, S Lee, C Chu, D Jain, P Kerpedjiev, GM Nelson, JM Walsh, ...
Genome biology 21, 1-15, 2020
652020
Adaptable probabilistic mapping of short reads using position specific scoring matrices
P Kerpedjiev, J Frellsen, S Lindgreen, A Krogh
BMC bioinformatics 15, 1-17, 2014
532014
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps
MR Vollger, P Kerpedjiev, AM Phillippy, EE Eichler
Bioinformatics 38 (7), 2049-2051, 2022
472022
HiPiler: Visual Exploration Of Large Genome Interaction Matrices With Interactive Small Multiples
F Lekschas, B Bach, P Kerpedjiev, N Gehlenborg, H Pfister
biorXiv, 123588, 2017
452017
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
BC Thiel, IK Beckmann, P Kerpedjiev, IL Hofacker
F1000Research 8, 2019
282019
Pattern-driven navigation in 2D multiscale visualizations with scalable insets
F Lekschas, M Behrisch, B Bach, P Kerpedjiev, N Gehlenborg, H Pfister
IEEE transactions on visualization and computer graphics 26 (1), 611-621, 2019
252019
The dynseq browser track shows context-specific features at nucleotide resolution
S Nair, A Barrett, D Li, BJ Raney, BT Lee, P Kerpedjiev, V Ramalingam, ...
Nature genetics 54 (11), 1581-1583, 2022
52022
DrForna: visualization of cotranscriptional folding
AR Tănasie, P Kerpedjiev, S Hammer, S Badelt
Bioinformatics 39 (9), btad555, 2023
22023
The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution
S Nair, A Barrett, D Li, BJ Raney, BT Lee, P Kerpedjiev, V Ramalingam, ...
bioRxiv, 2022.05. 26.493621, 2022
12022
Pattern-Driven Navigation in 2D Multiscale Visual Spaces with Scalable Insets
F Lekschas, M Behrisch, B Bach, P Kerpedjiev, N Gehlenborg, H Pfister
bioRxiv, 2018
12018
HiPiler
F Lekschas, B Bach, P Kerpedjiev, N Gehlenborg, H Pfister
2019
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Articles 1–20