Cole Trapnell

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Jay ShendureProfessor of Genome Sciences, University of WashingtonPatvirtintas el. paštas uw.edu
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityPatvirtintas el. paštas jhu.edu
Lior PachterBren Professor of Computational Biology, CaltechPatvirtintas el. paštas caltech.edu
Loyal A. GoffJohns Hopkins Institute of Genetic MedicinePatvirtintas el. paštas jhmi.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentPatvirtintas el. paštas jhu.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkPatvirtintas el. paštas umd.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityPatvirtintas el. paštas cs.jhu.edu
David R KelleyCalico LabsPatvirtintas el. paštas calicolabs.com
Adam RobertsGoogle DeepMindPatvirtintas el. paštas google.com
Daehwan KimUniversity of Texas Southwestern Medical CenterPatvirtintas el. paštas UTSouthwestern.edu
Tarjei S. MikkelsenPatvirtintas el. paštas alum.mit.edu
Ali MortazaviProfessor of Developmental and Cell Biology, University of California, IrvinePatvirtintas el. paštas uci.edu
Bruce C. Trapnell, MDProfessor of Medicine and Pediatrics, University of CincinnatiPatvirtintas el. paštas cchmc.org
Julius B. LucksProfessor, Northwestern UniversityPatvirtintas el. paštas northwestern.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityPatvirtintas el. paštas cs.jhu.edu
Arjun RajProfessor of Bioengineering, Professor of Genetics, University of PennsylvaniaPatvirtintas el. paštas seas.upenn.edu
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OPatvirtintas el. paštas lbl.gov
Marcel E. DingerUniversity of SydneyPatvirtintas el. paštas marceldinger.net
Manolis KellisProfessor of Computer Science, MIT and Broad InstitutePatvirtintas el. paštas mit.edu
Amitabh VarshneyDean, College of Computer, Mathematical, and Natural Sciences,Professor of Computer SciencePatvirtintas el. paštas cs.umd.edu

Stebėti

Cole Trapnell

Associate Professor, Dept. of Genome Sciences, University of Washington

Patvirtintas el. paštas uw.edu - Pagrindinis puslapis

single-cell genomics developmental genetics gene regulation


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	23742	2009
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ... Nature biotechnology 28 (5), 511-515, 2010	15358	2010
TopHat: discovering splice junctions with RNA-Seq C Trapnell, L Pachter, SL Salzberg Bioinformatics 25 (9), 1105-1111, 2009	13428	2009
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14, 1-13, 2013	13419	2013
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012	13050	2012
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells C Trapnell, D Cacchiarelli, J Grimsby, P Pokharel, S Li, M Morse, ... Nature biotechnology 32 (4), 381-386, 2014	5358	2014
Differential analysis of gene regulation at transcript resolution with RNA-seq C Trapnell, DG Hendrickson, M Sauvageau, L Goff, JL Rinn, L Pachter Nature biotechnology 31 (1), 46-53, 2013	3862	2013
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses MN Cabili, C Trapnell, L Goff, M Koziol, B Tazon-Vega, A Regev, JL Rinn Genes & development 25 (18), 1915-1927, 2011	3777	2011
Reversed graph embedding resolves complex single-cell trajectories X Qiu, Q Mao, Y Tang, L Wang, R Chawla, HA Pliner, C Trapnell Nature methods 14 (10), 979-982, 2017	3260	2017
The single-cell transcriptional landscape of mammalian organogenesis J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim, AJ Hill, F Zhang, ... Nature 566 (7745), 496-502, 2019	2808	2019
Improving RNA-Seq expression estimates by correcting for fragment bias A Roberts, C Trapnell, J Donaghey, JL Rinn, L Pachter Genome biology 12, 1-14, 2011	1556	2011
Single-cell mRNA quantification and differential analysis with Census X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell Nature methods 14 (3), 309-315, 2017	1379	2017
Comprehensive single-cell transcriptional profiling of a multicellular organism J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ... Science 357 (6352), 661-667, 2017	1351	2017
Computational methods for transcriptome annotation and quantification using RNA-seq M Garber, MG Grabherr, M Guttman, C Trapnell Nature methods 8 (6), 469-477, 2011	1313	2011
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ... Science 348 (6237), 910-914, 2015	1246	2015
Identification of novel transcripts in annotated genomes using RNA-Seq A Roberts, H Pimentel, C Trapnell, L Pachter Bioinformatics 27 (17), 2325-2329, 2011	1224	2011
Defining cell types and states with single-cell genomics C Trapnell Genome research 25 (10), 1491-1498, 2015	840	2015
Joint profiling of chromatin accessibility and gene expression in thousands of single cells J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ... Science 361 (6409), 1380-1385, 2018	798	2018
A single-cell atlas of in vivo mammalian chromatin accessibility DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ... Cell 174 (5), 1309-1324. e18, 2018	722	2018
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014	695	2014

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