Sergey Shmakov
Sergey Shmakov
Patvirtintas el. paštas
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
OO Abudayyeh, JS Gootenberg, S Konermann, J Joung, IM Slaymaker, ...
Science 353 (6299), aaf5573, 2016
Discovery and functional characterization of diverse class 2 CRISPR-Cas systems
S Shmakov, OO Abudayyeh, KS Makarova, YI Wolf, JS Gootenberg, ...
Molecular cell 60 (3), 385-397, 2015
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ...
Nature Reviews Microbiology 18 (2), 67-83, 2020
Diversity and evolution of class 2 CRISPR–Cas systems
S Shmakov, A Smargon, D Scott, D Cox, N Pyzocha, W Yan, ...
Nature reviews microbiology 15 (3), 169-182, 2017
Cas13b is a type VI-B CRISPR-associated RNA-guided RNase differentially regulated by accessory proteins Csx27 and Csx28
AA Smargon, DBT Cox, NK Pyzocha, K Zheng, IM Slaymaker, ...
Molecular cell 65 (4), 618-630. e7, 2017
Recruitment of CRISPR-Cas systems by Tn7-like transposons
JE Peters, KS Makarova, S Shmakov, EV Koonin
Proceedings of the National Academy of Sciences 114 (35), E7358-E7366, 2017
The CRISPR spacer space is dominated by sequences from species-specific mobilomes
SA Shmakov, V Sitnik, KS Makarova, YI Wolf, KV Severinov, EV Koonin
MBio 8 (5), e01397-17, 2017
CRISPR–Cas in mobile genetic elements: counter-defence and beyond
G Faure, SA Shmakov, WX Yan, DR Cheng, DA Scott, JE Peters, ...
Nature Reviews Microbiology 17 (8), 513-525, 2019
Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis
SA Shmakov, KS Makarova, YI Wolf, KV Severinov, EV Koonin
Proceedings of the National Academy of Sciences 115 (23), E5307-E5316, 2018
Pervasive generation of oppositely oriented spacers during CRISPR adaptation
S Shmakov, E Savitskaya, E Semenova, MD Logacheva, KA Datsenko, ...
Nucleic acids research 42 (9), 5907-5916, 2014
Thousands of previously unknown phages discovered in whole-community human gut metagenomes
S Benler, N Yutin, D Antipov, M Rayko, S Shmakov, AB Gussow, ...
Microbiome 9 (1), 1-17, 2021
Metagenomic analysis of bacterial communities of Antarctic surface snow
A Lopatina, S Medvedeva, S Shmakov, MD Logacheva, V Krylenkov, ...
Frontiers in Microbiology 7, 398, 2016
On the origin of reverse transcriptase-using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires
S Silas, KS Makarova, S Shmakov, D Páez-Espino, G Mohr, Y Liu, ...
MBio 8 (4), e00897-17, 2017
Phylogenomics of Cas4 family nucleases
S Hudaiberdiev, S Shmakov, YI Wolf, MP Terns, KS Makarova, EV Koonin
BMC evolutionary biology 17 (1), 1-14, 2017
Machine-learning approach expands the repertoire of anti-CRISPR protein families
AB Gussow, AE Park, AL Borges, SA Shmakov, KS Makarova, YI Wolf, ...
Nature communications 11 (1), 3784, 2020
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ...
Nature Communications 12 (1), 1044, 2021
Altered stoichiometry Escherichia coli Cascade complexes with shortened CRISPR RNA spacers are capable of interference and primed adaptation
K Kuznedelov, V Mekler, S Lemak, M Tokmina-Lukaszewska, ...
Nucleic acids research, gkw914, 2016
Recent mobility of casposons, self-synthesizing transposons at the origin of the CRISPR-Cas immunity
M Krupovic, S Shmakov, KS Makarova, P Forterre, EV Koonin
Genome biology and evolution 8 (2), 375-386, 2016
CRISPR enzymes and systems
K Severinov, F Zhang, YI Wolf, S Shmakov, E Semenova, L Minakhin, ...
US Patent 11,060,115, 2021
Toxin-antitoxin RNA pairs safeguard CRISPR-Cas systems
M Li, L Gong, F Cheng, H Yu, D Zhao, R Wang, T Wang, S Zhang, J Zhou, ...
Science 372 (6541), eabe5601, 2021
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Straipsniai 1–20