Rafał Ślusarz
Rafał Ślusarz
Faculty of Chemistry, University of Gdansk
Patvirtintas el. paštas - Pagrindinis puslapis
A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
A Liwo, M Baranowski, C Czaplewski, E Gołaś, Y He, D Jagieła, P Krupa, ...
Journal of molecular modeling 20, 1-15, 2014
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
Lessons from application of the UNRES force field to predictions of structures of CASP10 targets
Y He, MA Mozolewska, P Krupa, AK Sieradzan, TK Wirecki, A Liwo, ...
Proceedings of the National Academy of Sciences 110 (37), 14936-14941, 2013
Performance of protein-structure predictions with the physics-based UNRES force field in CASP11
P Krupa, MA Mozolewska, M Wiśniewska, Y Yin, Y He, AK Sieradzan, ...
Bioinformatics 32 (21), 3270-3278, 2016
Molecular Docking-Based Study of Vasopressin Analogues Modified at Positions 2 and 3 with N-Methylphenylalanine:  Influence on Receptor-Bound …
MJ Ślusarz, E Sikorska, R Ślusarz, J Ciarkowski
Journal of Medicinal Chemistry 49 (8), 2463-2469, 2006
Analysis of interactions responsible for vasopressin binding to human neurohypophyseal hormone receptors—molecular dynamics study of the activated receptor–vasopressin–Gα systems
MJ Ślusarz, A Giełdoń, R Ślusarz, J Ciarkowski
Journal of Peptide Science: An Official Publication of the European Peptide …, 2006
Molecular dynamics simulation of human neurohypophyseal hormone receptors complexed with oxytocin—modeling of an activated state
MJ Ślusarz, R Ślusarz, J Ciarkowski
Journal of peptide science: an official publication of the European Peptide …, 2006
Molecular modeling of interactions of the non-peptide antagonist YM087 with the human vasopressin V1a, V2 receptors and with oxytocin receptors.
A Giełdoń, R Kaźmierkiewicz, R Ślusarz, J Ciarkowski
Journal of computer-aided molecular design 15, 1085-1104, 2001
A hypothesis for GPCR activation
J Ciarkowski, M Witt, R Ślusarz
Journal of Molecular Modeling 11, 407-415, 2005
Investigation of mechanism of desmopressin binding in vasopressin V2 receptor versus vasopressin V1a and oxytocin receptors: Molecular dynamics simulation of the agonist‐bound …
MJ Ślusarz, R Ślusarz, J Ciarkowski
Biopolymers: Original Research on Biomolecules 81 (5), 321-338, 2006
Interaction of class AG protein-coupled receptors with G proteins.
R Slusarz, J Ciarkowski
Acta Biochimica Polonica 51 (1), 129-136, 2004
Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment
EA Lubecka, AS Karczyńska, AG Lipska, AK Sieradzan, K Ziȩba, ...
Journal of Molecular Graphics and Modelling 92, 154-166, 2019
Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets
A Karczyńska, MA Mozolewska, P Krupa, A Giełdoń, KK Bojarski, ...
Journal of Molecular Graphics and Modelling 83, 92-99, 2018
Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment
A Antoniak, I Biskupek, KK Bojarski, C Czaplewski, A Giełdoń, M Kogut, ...
Journal of Molecular Graphics and Modelling 108, 108008, 2021
Molecular modeling of Gram-positive bacteria peptidoglycan layer, selected glycopeptide antibiotics and vancomycin derivatives modified with sugar moieties
R Ślusarz, M Szulc, J Madaj
Carbohydrate research 389, 154-164, 2014
Molecular modeling of the neurohypophyseal receptor/atosiban complexes
MJ Slusarz, R Slusarz, RK Trojnar, K Wisniewski, J Ciarkowski
Protein and Peptide Letters 10 (3), 295-302, 2003
Conformational stability of the full‐atom hexameric model of the ClpB chaperone from Escherichia coli
S Ziętkiewicz, MJ Ślusarz, R Ślusarz, K Liberek, S Rodziewicz‐Motowidło
Biopolymers: Original Research on Biomolecules 93 (1), 47-60, 2010
Extension of the UNRES coarse-grained force field to membrane proteins in the lipid bilayer
K Ziȩba, M Ślusarz, R Ślusarz, A Liwo, C Czaplewski, AK Sieradzan
The Journal of Physical Chemistry B 123 (37), 7829-7839, 2019
Study of new oxytocin antagonist barusiban (fe200 440) affinity toward human oxytocin receptor versus vasopressin V1A and V2 receptors–molecular dynamics simulation in popc bilayer
MJ Ślusarz, A Giełdoń, R Ślusarz, J Trojnar, R Meadows, J Ciarkowski
QSAR & Combinatorial Science 24 (5), 603-610, 2005
Improved consensus-fragment selection in template-assisted prediction of protein structures with the UNRES force field in CASP13
AS Karczyńska, K Ziȩba, U Uciechowska, MA Mozolewska, P Krupa, ...
Journal of Chemical Information and Modeling 60 (3), 1844-1864, 2020
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Straipsniai 1–20