Carl Kingsford

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Geet DuggalPh.D. Student, School of Computer Science, Carnegie Mellon UniversityPatvirtintas el. paštas cs.cmu.edu
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityPatvirtintas el. paštas jhu.edu
Saket NavlakhaAssociate Professor, Cold Spring Harbor LaboratoryPatvirtintas el. paštas cshl.edu
Darya FilippovaHippocraticAIPatvirtintas el. paštas hippocraticai.com
Niranjan NagarajanSenior Group Leader, Genome Institute of SingaporePatvirtintas el. paštas gis.a-star.edu.sg
Mihai PopProfessor of Computer Science, University of Maryland, College ParkPatvirtintas el. paštas umd.edu
Stephen M. MountAssociate Professor, Dept. of Cell Biology and Molecular Genetics, University of MarylandPatvirtintas el. paštas umd.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityPatvirtintas el. paštas cs.jhu.edu
Sridhar HannenhalliSenior Investigator, Cancer Data Science Lab, National Cancer Institute. NIHPatvirtintas el. paštas nih.gov
samir khullerBarris Professor and Chair of Computer Science, Northwestern UniversityPatvirtintas el. paštas northwestern.edu
Elena ZaslavskyAssociate Professor, Neurology, Mount Sinai School of MedicinePatvirtintas el. paštas mssm.edu
Fernando BenadonAmerican UniversityPatvirtintas el. paštas american.edu
David R KelleyCalico LabsPatvirtintas el. paštas calicolabs.com

Stebėti

Carl Kingsford

Professor, Computational Biology Department, School of Computer Science, Carnegie

Patvirtintas el. paštas cs.cmu.edu - Pagrindinis puslapis

Computational Biology Algorithms


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Salmon provides fast and bias-aware quantification of transcript expression R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford Nature methods 14 (4), 417-419, 2017	8817	2017
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers G Marçais, C Kingsford Bioinformatics 27 (6), 764-770, 2011	3674	2011
What are decision trees? C Kingsford, SL Salzberg Nature biotechnology 26 (9), 1011-1013, 2008	832	2008
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms R Patro, SM Mount, C Kingsford Nature biotechnology 32 (5), 462-464, 2014	778	2014
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake CL Kingsford, K Ayanbule, SL Salzberg Genome biology 8, 1-12, 2007	596	2007
The power of protein interaction networks for associating genes with diseases S Navlakha, C Kingsford Bioinformatics 26 (8), 1057-1063, 2010	426	2010
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ... Nature 574 (7777), 187-192, 2019	415	2019
Genome analysis linking recent European and African influenza (H5N1) viruses SL Salzberg, C Kingsford, G Cattoli, DJ Spiro, DA Janies, MM Aly, ... Emerging infectious diseases 13 (5), 713, 2007	265	2007
Global network alignment using multiscale spectral signatures R Patro, C Kingsford Bioinformatics 28 (23), 3105-3114, 2012	254	2012
Solving and analyzing side-chain positioning problems using linear and integer programming CL Kingsford, B Chazelle, M Singh Bioinformatics 21 (7), 1028-1039, 2005	250	2005
Identification of alternative topological domains in chromatin D Filippova, R Patro, G Duggal, C Kingsford Algorithms for Molecular Biology 9, 1-11, 2014	249	2014
Accurate assembly of transcripts through phase-preserving graph decomposition M Shao, C Kingsford Nature biotechnology 35 (12), 1167-1169, 2017	198	2017
Assembly complexity of prokaryotic genomes using short reads C Kingsford, MC Schatz, M Pop BMC bioinformatics 11, 1-11, 2010	194	2010
Salmon: accurate, versatile and ultrafast quantification from RNA-seq data using lightweight-alignment R Patro, G Duggal, C Kingsford BioRxiv 10, 021592, 2015	176	2015
Fast search of thousands of short-read sequencing experiments B Solomon, C Kingsford Nature biotechnology 34 (3), 300-302, 2016	165	2016
Alignment and mapping methodology influence transcript abundance estimation A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ... Genome biology 21, 1-29, 2020	156	2020
Alignment and clustering of phylogenetic markers-implications for microbial diversity studies JR White, S Navlakha, N Nagarajan, MR Ghodsi, C Kingsford, M Pop BMC bioinformatics 11, 1-10, 2010	115	2010
A semidefinite programming approach to side chain positioning with new rounding strategies B Chazelle, C Kingsford, M Singh INFORMS Journal on Computing 16 (4), 380-392, 2004	111	2004
Network archaeology: uncovering ancient networks from present-day interactions S Navlakha, C Kingsford PLoS computational biology 7 (4), e1001119, 2011	93	2011
Experimental construction of very large scale DNA databases with associative search capability JH Reif, TH LaBean, M Pirrung, VS Rana, B Guo, C Kingsford, ... DNA Computing: 7th International Workshop on DNA-Based Computers, DNA7 Tampa …, 2002	91	2002

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