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John Vant
John Vant
Postdoctoral Research Associate, Oak Ridge National Lab
Verified email at ornl.gov
Title
Cited by
Cited by
Year
ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome
AT Baker, RJ Boyd, D Sarkar, A Teijeira-Crespo, CK Chan, E Bates, ...
Science Advances 7 (49), eabl8213, 2021
1432021
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism
A Singharoy, C Maffeo, KH Delgado-Magnero, DJK Swainsbury, M Sener, ...
Cell 179 (5), 1098-1111. e23, 2019
1372019
CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps
M Shekhar, G Terashi, C Gupta, D Sarkar, G Debussche, NJ Sisco, ...
Matter 4 (10), 3195-3216, 2021
35*2021
Flexible Fitting of Small Molecules into Electron Microscopy Maps Using Molecular Dynamics Simulations with Neural Network Potentials
JW Vant, SLJ Lahey, K Jana, M Shekhar, D Sarkar, BH Munk, ...
Journal of chemical information and modeling 60 (5), 2591-2604, 2020
262020
Data-guided Multi-Map variables for ensemble refinement of molecular movies
JW Vant, D Sarkar, E Streitwieser, G Fiorin, R Skeel, JV Vermaas, ...
The Journal of Chemical Physics 153 (21), 2020
132020
Exploring cryo-electron microscopy with molecular dynamics
JW Vant, D Sarkar, J Nguyen, AT Baker, JV Vermaas, A Singharoy
Biochemical Society Transactions 50 (1), 569-581, 2022
112022
Energy landscape of the SARS-CoV-2 reveals extensive conformational heterogeneity
G Mashayekhi, J Vant, A Polavarapu, A Ourmazd, A Singharoy
Current research in structural biology 4, 68-77, 2022
82022
ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome. Sci. Adv. 7, eabl8213
AT Baker, RJ Boyd, D Sarkar, A Teijeira-Crespo, CK Chan, E Bates, ...
52021
Large-Scale Molecular Dynamics Simulations of Cellular Compartments
E Wilson, J Vant, J Layton, R Boyd, H Lee, M Turilli, B Hernández, ...
Structure and Function of Membrane Proteins, 335-356, 2021
52021
Scalable Adaptive Protein Ensemble Refinement Integrating Flexible Fitting
D Sarkar, H Lee, JW Vant, M Turilli, S Jha, A Singharoy
bioRxiv, 2021
2*2021
Functional Organization of Glycolytic Metabolon on Mitochondria
H Wang, J Vant, Y Wu, R Sanchez, ML Micou, A Zhang, V Luczak, SB Yu, ...
bioRxiv, 2023
12023
Analysis of the rotationally-resolved infrared spectrum of CD379Br and CD381Br between 900 and 1400 cm− 1
T Masiello, JW Vant, CS Brauer, TA Blake
Journal of Molecular Spectroscopy 393, 111760, 2023
12023
Learning Free Energy Pathways through Reinforcement Learning of Adaptive Steered Molecular Dynamics
N Ho, JK Cava, J Vant, A Shukla, J Miratsky, P Turaga, R Maciejewski, ...
bioRxiv, 2022.10. 04.510845, 2022
12022
The high-resolution infrared analysis of the ν3 and ν6 bands of CD3Br
T Masiello, S Ray, JW Vant, CS Brauer, TA Blake
Journal of Molecular Spectroscopy 376, 111405, 2021
12021
Poor Person’s pH Simulation of Membrane Proteins
C Gupta, U Khaniya, JW Vant, M Shekhar, J Mao, MR Gunner, ...
Computational Design of Membrane Proteins, 197-217, 2021
12021
Mind reading of the proteins: Deep-learning to forecast molecular dynamics
C Gupta, JK Cava, D Sarkar, E Wilson, J Vant, S Murray, A Singharoy, ...
bioRxiv, 2020.07. 28.225490, 2020
12020
Molecular Dynamics Flexible Fitting: All You Want to Know About Resolution Exchange
JW Vant, D Sarkar, C Gupta, MS Shekhar, S Mittal, A Singharoy
Protein Structure Prediction, 301-315, 2020
12020
CryoFold: determining protein structures and ensembles from cryo-EM data
M Shekhar, G Terashi, C Gupta, D Sarkar, G Debussche, NJ Sisco, ...
12019
Structural mechanism of HP1α-dependent transcriptional repression and chromatin compaction
V Sokolova, J Miratsky, V Svetlov, M Brenowitz, J Vant, T Lewis, K Dryden, ...
bioRxiv, 2023
2023
Structural mechanism of HP1α-dependent transcriptional repression and chromatin compaction
V Sokolova, J Miratsky, V Svetlov, M Brenowitz, J Vant, T Lewis, K Dryden, ...
Biorxiv, 2023
2023
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