David Páez-Espino

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Bendraautoriai

Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryPatvirtintas el. paštas lbl.gov
Natalia IvanovaDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Jillian BANFIELDUniversity of California BerkeleyPatvirtintas el. paštas berkeley.edu
Jennifer DoudnaProfessor of Molecular and Cell Biology and Chemistry, UC BerkeleyPatvirtintas el. paštas berkeley.edu
Tanja WoykeDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Georgios A. PavlopoulosDirector of Bioinformatics (Research Associate Professor), IFBR - BSRC Fleming & pMedGR (UoA)Patvirtintas el. paštas fleming.gr
David (Dudu) BursteinTel Aviv UniversityPatvirtintas el. paštas tau.ac.il
Víctor de Lorenzo (ORCID 0000-0002-...Professor of Research of the CSICPatvirtintas el. paštas cnb.csic.es
Simon RouxDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Edward M RubinScience CorpsPatvirtintas el. paštas science-corps.org
Frederik SchulzResearch Scientist at DOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Rekha SeshadriU.S. Department of Energy JGIPatvirtintas el. paštas lbl.gov
Stephen NayfachDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Gonzalo Durante-RodríguezPostdoctoral Researcher (CIB-CSIC)Patvirtintas el. paštas cib.csic.es
Max Chavarría (ORCID: 0000-0001-59...1. Chemistry School & CIPRONA, Universidad de Costa Rica 2. CENIBiotPatvirtintas el. paštas ucr.ac.cr
Neha J VargheseDOE Joint Genome InstitutePatvirtintas el. paštas lbl.gov
Michalis HadjithomasLifeMine Therapeutics, Inc.Patvirtintas el. paštas lifeminetx.com
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandPatvirtintas el. paštas uq.edu.au
Pablo Iván Nikel Mayer (ORCID 0000-...Senior Researcher & Group Leader at The Novo Nordisk Foundation Center for BiosustainabilityPatvirtintas el. paštas biosustain.dtu.dk

Stebėti

David Páez-Espino

Mammoth BioSciences // DOE-JGI

Patvirtintas el. paštas mammothbiosci.com

CRISPR-Cas virus-bacteriophages Virome-Microbiome Microbiology SynBio


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Uncovering Earth’s virome D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ... Nature 536 (7617), 425-430, 2016	777	2016
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes LB Harrington, D Burstein, JS Chen, D Paez-Espino, E Ma, IP Witte, ... Science 362 (6416), 839-842, 2018	622	2018
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ... Nucleic acids research 41 (D1), D666-D675, 2013	565	2013
Microbial responses to environmental arsenic D Páez-Espino, J Tamames, V de Lorenzo, D Cánovas Biometals 22, 117-130, 2009	376	2009
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v. 4) M Huntemann, NN Ivanova, K Mavromatis, HJ Tripp, D Paez-Espino, ... Standards in genomic sciences 10, 1-6, 2015	352	2015
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359-367, 2018	350	2018
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	320	2021
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	285	2019
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676-683, 2017	218	2017
Strong bias in the bacterial CRISPR elements that confer immunity to phage D Paez-Espino, W Morovic, CL Sun, BC Thomas, K Ueda, B Stahl, ... Nature Communications 4, 1430, 2013	197	2013
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic acids research 45 (D1), gkw1030, 2016	172	2016
Giant virus diversity and host interactions through global metagenomics F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ... Nature 578 (7795), 432-436, 2020	165	2020
CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus D Paez-Espino, I Sharon, W Morovic, B Stahl, BC Thomas, R Barrangou, ... MBio 6 (2), e00262-15, 2015	158	2015
A thermostable Cas9 with increased lifetime in human plasma LB Harrington, D Paez-Espino, BT Staahl, JS Chen, E Ma, NC Kyrpides, ... Nature communications 8 (1), 1424, 2017	157	2017
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 49 (D1), D764-D775, 2021	149	2021
IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 47 (D1), D678-D686, 2019	136	2019
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ... Nature communications 7 (1), 10476, 2016	130	2016
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome S Nayfach, D Páez-Espino, L Call, SJ Low, H Sberro, NN Ivanova, ... Nature microbiology 6 (7), 960-970, 2021	120	2021
A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34, 2020	117	2020
Murine colitis reveals a disease-associated bacteriophage community BA Duerkop, M Kleiner, D Paez-Espino, W Zhu, B Bushnell, B Hassell, ... Nature microbiology 3 (9), 1023-1031, 2018	109	2018

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