| The MaSuRCA genome assembler AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke Bioinformatics 29 (21), 2669-2677, 2013 | 1425 | 2013 |
| A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10, 1-10, 2009 | 1375 | 2009 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 893 | 2012 |
| The genome of Cryptosporidium hominis P Xu, G Widmer, Y Wang, LS Ozaki, JM Alves, MG Serrano, D Puiu, ... Nature 431 (7012), 1107-1112, 2004 | 685 | 2004 |
| Draft genome sequence of the oilseed species Ricinus communis AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis, D Puiu, ... Nature biotechnology 28 (9), 951-956, 2010 | 596 | 2010 |
| Genome sequence of the progenitor of the wheat D genome Aegilops tauschii MC Luo, YQ Gu, D Puiu, H Wang, SO Twardziok, KR Deal, N Huo, T Zhu, ... Nature 551 (7681), 498-502, 2017 | 588 | 2017 |
| Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ... Genome biology 15, 1-13, 2014 | 557 | 2014 |
| Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics P Arensburger, K Megy, RM Waterhouse, J Abrudan, P Amedeo, B Antelo, ... Science 330 (6000), 86-88, 2010 | 546 | 2010 |
| Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ... PLoS biology 8 (9), e1000475, 2010 | 474 | 2010 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 472 | 2023 |
| Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ... BMC genomics 9, 1-16, 2008 | 433 | 2008 |
| Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ... Genome biology 11, 1-22, 2010 | 430 | 2010 |
| Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ... Genome research 27 (5), 787-792, 2017 | 420 | 2017 |
| Genomic signatures of evolutionary transitions from solitary to group living KM Kapheim, H Pan, C Li, SL Salzberg, D Puiu, T Magoc, HM Robertson, ... Science 348 (6239), 1139-1143, 2015 | 401 | 2015 |
| The genomes of two key bumblebee species with primitive eusocial organization BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ... Genome biology 16, 1-32, 2015 | 399 | 2015 |
| Sequencing and assembly of the 22-Gb loblolly pine genome A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ... Genetics 196 (3), 875-890, 2014 | 394 | 2014 |
| Assembly of a pan-genome from deep sequencing of 910 humans of African descent RM Sherman, J Forman, V Antonescu, D Puiu, M Daya, N Rafaels, ... Nature genetics 51 (1), 30-35, 2019 | 365 | 2019 |
| The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum AV Zimin, D Puiu, R Hall, S Kingan, BJ Clavijo, SL Salzberg Gigascience 6 (11), gix097, 2017 | 301 | 2017 |
| Genome of the Opportunistic Pathogen Streptococcus sanguinis P Xu, JM Alves, T Kitten, A Brown, Z Chen, LS Ozaki, P Manque, X Ge, ... Journal of bacteriology 189 (8), 3166-3175, 2007 | 301 | 2007 |
| Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation JL Wegrzyn, JD Liechty, KA Stevens, LS Wu, CA Loopstra, ... Genetics 196 (3), 891-909, 2014 | 254 | 2014 |
