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Csilla Várnai
Csilla Várnai
Verified email at bham.ac.uk
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Cited by
Year
COVID-19 mortality in patients with cancer on chemotherapy or other anticancer treatments: a prospective cohort study
LYW Lee, JB Cazier, V Angelis, R Arnold, V Bisht, NA Campton, ...
The Lancet 395 (10241), 1919-1926, 2020
12612020
Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters
BM Javierre, OS Burren, SP Wilder, R Kreuzhuber, SM Hill, S Sewitz, ...
Cell 167 (5), 1369-1384. e19, 2016
10412016
Cell-cycle dynamics of chromosomal organization at single-cell resolution
T Nagano, Y Lubling, C Várnai, C Dudley, W Leung, Y Baran, ...
Nature 547 (7661), 61-67, 2017
7622017
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
G Wutz, C Várnai, K Nagasaka, DA Cisneros, RR Stocsits, W Tang, ...
The EMBO journal 36 (24), 3573-3599, 2017
7482017
COVID-19 prevalence and mortality in patients with cancer and the effect of primary tumour subtype and patient demographics: a prospective cohort study
LYW Lee, JB Cazier, T Starkey, SEW Briggs, R Arnold, V Bisht, S Booth, ...
The Lancet Oncology 21 (10), 1309-1316, 2020
6632020
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
J Cairns, P Freire-Pritchett, SW Wingett, C Várnai, A Dimond, V Plagnol, ...
Genome biology 17, 1-17, 2016
4332016
Comparison of Hi-C results using in-solution versus in-nucleus ligation
T Nagano, C Várnai, S Schoenfelder, BM Javierre, SW Wingett, P Fraser
Genome biology 16, 1-13, 2015
1992015
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
P Freire-Pritchett, S Schoenfelder, C Várnai, SW Wingett, J Cairns, ...
Elife 6, e21926, 2017
1612017
Parental-to-embryo switch of chromosome organization in early embryogenesis
S Collombet, N Ranisavljevic, T Nagano, C Varnai, T Shisode, W Leung, ...
Nature 580 (7801), 142-146, 2020
1472020
ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL
G Wutz, R Ladurner, BG St Hilaire, RR Stocsits, K Nagasaka, B Pignard, ...
Elife 9, e52091, 2020
1422020
Severity of COVID-19 in children with cancer: report from the United Kingdom Paediatric Coronavirus Cancer Monitoring Project
GC Millen, R Arnold, JB Cazier, H Curley, RG Feltbower, A Gamble, ...
British journal of cancer 124 (4), 754-759, 2021
1162021
QM/MM simulation of liquid water with an adaptive quantum region
N Bernstein, C Várnai, I Solt, SA Winfield, MC Payne, I Simon, M Fuxreiter, ...
Physical Chemistry Chemical Physics 14 (2), 646-656, 2012
1062012
The UK Coronavirus Cancer Monitoring Project: protecting patients with cancer in the era of COVID-19
UK Coronavirus Cancer Monitoring Project team
The Lancet. Oncology 21 (5), 622, 2020
712020
Exploring the energy landscapes of protein folding simulations with Bayesian computation
NS Burkoff, C Várnai, SA Wells, DL Wild
Biophysical journal 102 (4), 878-886, 2012
712012
Mortality among adults with cancer undergoing chemotherapy or immunotherapy and infected with COVID-19
C Várnai, C Palles, R Arnold, HM Curley, K Purshouse, VWT Cheng, ...
JAMA network open 5 (2), e220130-e220130, 2022
612022
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ...
Nature genetics 54 (7), 1037-1050, 2022
492022
Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells
H Koohy, DJ Bolland, LS Matheson, S Schoenfelder, C Stellato, A Dimond, ...
Genome biology 19, 1-24, 2018
412018
3D genome architecture from populations to single cells
M Furlan-Magaril, C Varnai, T Nagano, P Fraser
Current opinion in genetics & development 31, 36-41, 2015
382015
Widespread reorganisation of pluripotent factor binding and gene regulatory interactions between human pluripotent states
P Chovanec, AJ Collier, C Krueger, C Várnai, CI Semprich, ...
Nature communications 12 (1), 2098, 2021
362021
Tests of an adaptive QM/MM calculation on free energy profiles of chemical reactions in solution
C Varnai, N Bernstein, L Mones, G Csanyi
The Journal of Physical Chemistry B 117 (40), 12202-12211, 2013
362013
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Articles 1–20