Masanao Yajima
Masanao Yajima
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MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
G Finak, A McDavid, M Yajima, J Deng, V Gersuk, AK Shalek, CK Slichter, ...
Genome biology 16, 1-13, 2015
Why we (usually) don't have to worry about multiple comparisons
A Gelman, J Hill, M Yajima
Journal of research on educational effectiveness 5 (2), 189-211, 2012
arm: Data analysis using regression and multilevel/hierarchical models
A Gelman
http://cran. r-project. org/web/packages/arm, 2011
R2jags: Using R to run ‘JAGS’
YS Su, M Yajima
R package version 0.5-7 34, 2015
Multiple imputation with diagnostics (mi) in R: Opening windows into the black box
YS Su, A Gelman, J Hill, M Yajima
Journal of Statistical Software 45, 1-31, 2011
Transient rapamycin treatment can increase lifespan and healthspan in middle-aged mice
A Bitto, TK Ito, VV Pineda, NJ LeTexier, HZ Huang, E Sutlief, H Tung, ...
elife 5, e16351, 2016
R2jags: A Package for Running jags from R
YS Su, M Yajima
R package version 0.03-08, URL http://CRAN. R-project. org/package= R2jags, 2012
Decontamination of ambient RNA in single-cell RNA-seq with DecontX
S Yang, SE Corbett, Y Koga, Z Wang, WE Johnson, M Yajima, ...
Genome biology 21, 1-15, 2020
Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy
A Sheih, V Voillet, LA Hanafi, HA DeBerg, M Yajima, R Hawkins, V Gersuk, ...
Nature communications 11 (1), 219, 2020
Package ‘r2jags’
YS Su, M Yajima, MYS Su, J SystemRequirements
R package version 0.03-08, URL http://CRAN. R-project. org/package= R2jags, 2015
R2jags: a package for running jags from R. R package version 0.03-08
YS Su, M Yajima
Controlled human malaria infection leads to long-lasting changes in innate and innate-like lymphocyte populations
M Mpina, NJ Maurice, M Yajima, CK Slichter, HW Miller, M Dutta, ...
The Journal of Immunology 199 (1), 107-118, 2017
Undersmoothed kernel entropy estimators
L Paninski, M Yajima
IEEE Transactions on Information Theory 54 (9), 4384-4388, 2008
R2jags: Using R to Run JAGS; 2015
YS Su, M Yajima
URL https://CRAN. R-project. org/package= R2jags. R package version 0.5-7, 2018
Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program
TT Karagiannis, JP Cleary Jr, B Gok, AJ Henderson, NG Martin, M Yajima, ...
Nature communications 11 (1), 2611, 2020
Package ‘arm’
A Gelman, YS Su, M Yajima, J Hill, MG Pittau, J Kerman, T Zheng, V Dorie, ...
Data analysis using regression and multilevel/hierarchical models, 2015
mi: Missing data imputation and model checking
A Gelman, J Hill, YS Su, M Yajima, MG Pittau, B Goodrich, Y Si, J Kropko
R package version 0.9-93, 2013
Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data
R Hong, Y Koga, S Bandyadka, A Leshchyk, Y Wang, V Akavoor, X Cao, ...
Nature communications 13 (1), 1688, 2022
PKC downregulation upon rapamycin treatment attenuates mitochondrial disease
M Martin-Perez, AS Grillo, TK Ito, AS Valente, J Han, SW Entwisle, ...
Nature metabolism 2 (12), 1472-1481, 2020
Detecting differential patterns of interaction in molecular pathways
M Yajima, D Telesca, Y Ji, P Müller
Biostatistics 16 (2), 240-251, 2015
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