|High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity|
NJ Loman, C Constantinidou, JZM Chan, M Halachev, M Sergeant, ...
Nature Reviews Microbiology 10 (9), 599-606, 2012
|A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104: H4|
NJ Loman, C Constantinidou, M Christner, H Rohde, JZM Chan, J Quick, ...
Jama 309 (14), 1502-1510, 2013
|Rapid whole-genome sequencing of Mycobacterium tuberculosis isolates directly from clinical samples|
AC Brown, JM Bryant, K Einer-Jensen, J Holdstock, DT Houniet, ...
Journal of clinical microbiology 53 (7), 2230-2237, 2015
|Defining bacterial species in the genomic era: insights from the genus Acinetobacter|
JZM Chan, MR Halachev, NJ Loman, C Constantinidou, MJ Pallen
BMC microbiology 12 (1), 1-11, 2012
|Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe|
GL Kay, MJ Sergeant, Z Zhou, JZM Chan, A Millard, J Quick, I Szikossy, ...
Nature communications 6 (1), 6717, 2015
|The gut-adherent microbiota of PSCIBD is distinct to that of IBD|
MN Quraishi, M Sergeant, G Kay, T Iqbal, J Chan, C Constantinidou, ...
Gut 66 (2), 386-388, 2017
|Direct whole-genome sequencing of sputum accurately identifies drug-resistant Mycobacterium tuberculosis faster than MGIT culture sequencing|
RM Doyle, C Burgess, R Williams, R Gorton, H Booth, J Brown, JM Bryant, ...
Journal of Clinical Microbiology 56 (8), e00666-18, 2018
|Metagenomic analysis of tuberculosis in a mummy|
JZM Chan, MJ Sergeant, OYC Lee, DE Minnikin, GS Besra, I Pap, ...
New England Journal of Medicine 369 (3), 289-290, 2013
|Impact of postoperative non-steroidal anti-inflammatory drugs on adverse events after gastrointestinal surgery|
Journal of British Surgery 101 (11), 1413-1423, 2014
|Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumanniiin Birmingham, England|
MR Halachev, JZM Chan, CI Constantinidou, N Cumley, C Bradley, ...
Genome medicine 6 (11), 1-13, 2014
|Genome sequencing in clinical microbiology|
JZM Chan, MJ Pallen, B Oppenheim, C Constantinidou
Nature biotechnology 30 (11), 1068-1071, 2012
|Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes|
JZM Chan, AD Millard, NH Mann, H Schäfer
Frontiers in microbiology 5, 506, 2014
|Clinical significance of TP53, BIRC3, ATM and MAPK-ERK genes in chronic lymphocytic leukaemia: data from the randomised UK LRF CLL4 trial|
SJ Blakemore, R Clifford, H Parker, P Antoniou, E Stec-Dziedzic, ...
Leukemia 34 (7), 1760-1774, 2020
|Reduced right ventricular function predicts long-term cardiac re-hospitalization after cardiac surgery|
LK Lella, VL Sales, Y Goldsmith, J Chan, M Iskandir, I Gulkarov, ...
PLoS One 10 (7), e0132808, 2015
|Deletion of TnAbaR23 Results in both Expected and Unexpected Antibiogram Changes in a Multidrug-Resistant Acinetobacter baumannii Strain|
M Kochar, M Crosatti, EM Harrison, B Rieck, J Chan, C Constantinidou, ...
Antimicrobial agents and chemotherapy 56 (4), 1845-1853, 2012
|Enrichment by hybridisation of long DNA fragments for Nanopore sequencing|
SE Eckert, JZM Chan, D Houniet, J Breuer, G Speight
Microbial genomics 2 (9), 2016
|Clonal expansion within pneumococcal serotype 6C after use of seven-valent vaccine|
NJ Loman, RA Gladstone, C Constantinidou, AS Tocheva, JMC Jefferies, ...
PloS one 8 (5), e64731, 2013
|Whole-genome sequence of the emerging pathogen Mycobacterium abscessus strain 47J26|
J Chan, M Halachev, E Yates, G Smith, M Pallen
Journal of bacteriology 194 (2), 549-549, 2012
|Probing the microbiota in PSC: the gut adherent micro-biota of PSC-IBD is distinct to that of IBD and controls: 138|
MN Quraishi, M Sergeant, GL Kay, T Iqbal, C Constantinidou, JZ Chan, ...
Hepatology 60, 267A, 2014
|The accurate detection by next-generation sequencing (NGS) of difficult to sequence genes (CALR, CEBPA, FLT3) associated with myeloid disorders using a hybridisation-based
G Speight, L Georgieva, E Uddin, N Cross
Cancer Genetics 214, 50-51, 2017