Stebėti
Supratim Mukherjee
Supratim Mukherjee
Staff Data Scientist at Joint Genome Institute, LBNL
Patvirtintas el. paštas lbl.gov
Pavadinimas
Cituota
Cituota
Metai
Microbial species delineation using whole genome sequences
NJ Varghese, S Mukherjee, N Ivanova, KT Konstantinidis, K Mavrommatis, ...
Nucleic Acids Research, 2015
6712015
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
5542021
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676-683, 2017
2412017
Genomes OnLine database (GOLD) v. 7: updates and new features
S Mukherjee, D Stamatis, J Bertsch, G Ovchinnikova, HY Katta, A Mojica, ...
Nucleic acids research 47 (D1), D649-D659, 2019
2142019
Genome-based taxonomic classification of Bacteroidetes
RL Hahnke, JP Meier-Kolthoff, M García-López, S Mukherjee, ...
Frontiers in microbiology 7, 208377, 2016
2122016
Genomes OnLine Database (GOLD) v. 6: data updates and feature enhancements
S Mukherjee, D Stamatis, J Bertsch, G Ovchinnikova, O Verezemska, ...
Nucleic acids research, gkw992, 2016
1932016
Genomes OnLine Database (GOLD) v. 8: overview and updates
S Mukherjee, D Stamatis, J Bertsch, G Ovchinnikova, JC Sundaramurthi, ...
Nucleic acids research 49 (D1), D723-D733, 2021
1662021
Large-scale contamination of microbial isolate genomes by Illumina PhiX control
S Mukherjee, M Huntemann, N Ivanova, NC Kyrpides, A Pati
Standards in genomic sciences 10, 1-4, 2015
1592015
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata
AP Camargo, S Nayfach, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 51 (D1), D733-D743, 2023
932023
The IMG/M data management and analysis system v. 7: content updates and new features
IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ...
Nucleic acids research 51 (D1), D723-D732, 2023
852023
DOE JGI metagenome workflow
A Clum, M Huntemann, B Bushnell, B Foster, B Foster, S Roux, PP Hajek, ...
Msystems 6 (3), 10.1128/msystems. 00804-20, 2021
602021
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
B Nowinski, CB Smith, CM Thomas, K Esson, R Marin III, CM Preston, ...
Scientific data 6 (1), 129, 2019
432019
Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v. 9
S Mukherjee, D Stamatis, CT Li, G Ovchinnikova, J Bertsch, ...
Nucleic acids research 51 (D1), D957-D963, 2023
402023
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
K Martin, K Schmidt, A Toseland, CA Boulton, K Barry, B Beszteri, ...
Nature Communications 12 (1), 5483, 2021
332021
The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
Boundy-Mills K, H M, B AR, R M, K S, N D, E JA, I P, S IR, T T, B DR, C J, ...
Applied and Environmental Microbiology, 2015
282015
Genome and transcriptome of Clostridium phytofermentans, catalyst for the direct conversion of plant feedstocks to fuels
E Petit, MV Coppi, JC Hayes, AC Tolonen, T Warnick, WG Latouf, ...
PLoS One 10 (6), e0118285, 2015
232015
Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress
S Mukhtar, AM Hirsch, N Khan, KA Malik, EA Humm, M Pellegrini, B Shi, ...
Phytobiomes Journal 4 (4), 364-374, 2020
192020
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
R Seshadri, S Roux, KJ Huber, D Wu, S Yu, D Udwary, L Call, S Nayfach, ...
Cell genomics 2 (12), 2022
182022
The role of zinc in the adaptive evolution of polar phytoplankton
N Ye, W Han, A Toseland, Y Wang, X Fan, D Xu, C van Oosterhout, ...
Nature ecology & evolution 6 (7), 965-978, 2022
162022
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot
AP Camargo, RSC de Souza, P de Britto Costa, IR Gerhardt, RA Dante, ...
Scientific data 6 (1), 140, 2019
162019
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Straipsniai 1–20