Stebėti
Gustavo Sacomoto
Gustavo Sacomoto
Post-Doc Researcher INRIA (Lyon, France)
Patvirtintas el. paštas inria.fr
Pavadinimas
Cituota
Cituota
Metai
KIS SPLICE: de-novo calling alternative splicing events from RNA-seq data
GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ...
BMC bioinformatics 13, 1-12, 2012
1292012
Optimal listing of cycles and st-paths in undirected graphs
E Birmelé, R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
Proceedings of the twenty-fourth annual ACM-SIAM symposium on Discrete …, 2013
1152013
Using cascading Bloom filters to improve the memory usage for de Brujin graphs
K Salikhov, G Sacomoto, G Kucherov
Algorithms for Molecular Biology 9, 1-10, 2014
882014
Using cascading Bloom filters to improve the memory usage for de Brujin graphs
K Salikhov, G Sacomoto, G Kucherov
International Workshop on Algorithms in Bioinformatics, 364-376, 2013
622013
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data
C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
Scientific reports 8 (1), 4307, 2018
372018
Efficiently Listing Bounded Length st-Paths
R Rizzi, G Sacomoto, MF Sagot
International Workshop on Combinatorial Algorithms, 318-329, 2014
342014
Lossless filter for multiple repeats with bounded edit distance
P Peterlongo, GAT Sacomoto, AP Do Lago, N Pisanti, MF Sagot
Algorithms for Molecular Biology 4, 1-20, 2009
282009
Computing and Listing st-Paths in Public Transportation Networks
K Böhmová, L Häfliger, M Mihalák, T Pröger, G Sacomoto, MF Sagot
Theory of Computing Systems 62, 600-621, 2018
262018
Efficient bubble enumeration in directed graphs
E Birmelé, P Crescenzi, R Ferreira, R Grossi, V Lacroix, A Marino, ...
String Processing and Information Retrieval: 19th International Symposium …, 2012
252012
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ...
Algorithms for molecular biology 12, 1-19, 2017
232017
Amortized-delay algorithm for listing chordless cycles in undirected graphs
R Ferreira, R Grossi, R Rizzi, G Sacomoto, MF Sagot
European Symposium on Algorithms, 418-429, 2014
232014
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data
G Sacomoto, V Lacroix, MF Sagot
International Workshop on Algorithms in Bioinformatics, 99-111, 2013
132013
Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ...
GigaScience 5 (1), s13742-015-0105-2, 2016
112016
On bubble generators in directed graphs
V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
Graph-Theoretic Concepts in Computer Science: 43rd International Workshop …, 2017
82017
Navigating in a sea of repeats in rna-seq without drowning
G Sacomoto, B Sinaimeri, C Marchet, V Miele, MF Sagot, V Lacroix
International Workshop on Algorithms in Bioinformatics, 82-96, 2014
72014
Algorithms in Bioinformatics
K Salikhov, G Sacomoto, G Kucherov
Springer, 2013
52013
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data. Sci Rep 8: 4307
C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
42018
Superstring Graph: a new approach for genome assembly
B Cazaux, G Sacomoto, E Rivals
Algorithmic Aspects in Information and Management: 11th International …, 2016
32016
Efficient algorithms for de novo assembly of alternative splicing events from RNA-seq data
G Sacomoto
arXiv preprint arXiv:1406.6047, 2014
32014
On bubble generators in directed graphs
V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
Algorithmica 82, 898-914, 2020
22020
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Straipsniai 1–20