| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 128 | 2019 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 103 | 2021 |
| Thermodynamics, size, and dynamics of zwitterionic dodecylphosphocholine and anionic sodium dodecyl sulfate mixed micelles E Sikorska, D Wyrzykowski, K Szutkowski, K Greber, EA Lubecka, ... Journal of Thermal Analysis and Calorimetry 123, 511-523, 2016 | 61 | 2016 |
| Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 42 | 2023 |
| Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13 JE Fajardo, R Shrestha, N Gil, A Belsom, SN Crivelli, C Czaplewski, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1283-1297, 2019 | 31 | 2019 |
| Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers A Liwo, C Czaplewski, AK Sieradzan, EA Lubecka, AG Lipska, Ł Golon, ... Progress in Molecular Biology and Translational Science 170, 73-122, 2020 | 28 | 2020 |
| Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment A Antoniak, I Biskupek, KK Bojarski, C Czaplewski, A Giełdoń, M Kogut, ... Journal of Molecular Graphics and Modelling 108, 108008, 2021 | 27 | 2021 |
| Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment EA Lubecka, AS Karczyńska, AG Lipska, AK Sieradzan, K Ziȩba, ... Journal of Molecular Graphics and Modelling 92, 154-166, 2019 | 26 | 2019 |
| Introduction of a bounded penalty function in contact‐assisted simulations of protein structures to omit false restraints EA Lubecka, A Liwo Journal of computational chemistry 40 (25), 2164-2178, 2019 | 23 | 2019 |
| Modeling the structure, dynamics, and transformations of proteins with the UNRES force field AK Sieradzan, C Czaplewski, P Krupa, MA Mozolewska, AS Karczyńska, ... Protein folding: Methods and protocols, 399-416, 2022 | 21 | 2022 |
| Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins AK Sieradzan, J Sans‐Duñó, EA Lubecka, C Czaplewski, AG Lipska, ... Journal of Computational Chemistry 44 (4), 602-625, 2023 | 20 | 2023 |
| Improved consensus-fragment selection in template-assisted prediction of protein structures with the UNRES force field in CASP13 AS Karczyńska, K Ziȩba, U Uciechowska, MA Mozolewska, P Krupa, ... Journal of Chemical Information and Modeling 60 (3), 1844-1864, 2020 | 16 | 2020 |
| A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. II. Backbone-local potentials of
EA Lubecka, A Liwo The Journal of Chemical Physics 147 (11), 2017 | 15 | 2017 |
| Arginine-, d-arginine-vasopressin, and their inverso analogues in micellar and liposomic models of cell membrane: CD, NMR, and molecular dynamics studies EA Lubecka, E Sikorska, D Sobolewski, A Prahl, J Slaninová, ... European Biophysics Journal 44, 727-743, 2015 | 14 | 2015 |
| Vomocytosis: too much booze, base, or calcium? M Cruz-Acuña, N Pacifici, JS Lewis MBio 10 (6), 10.1128/mbio. 02526-19, 2019 | 13 | 2019 |
| NMR studies of new arginine vasopressin analogs modified with α-2-indanylglycine enantiomers at position 2 bound to sodium dodecyl sulfate micelles E Lubecka, A Kwiatkowska, J Ciarkowski, E Sikorska Biophysical chemistry 151 (3), 139-148, 2010 | 13 | 2010 |
| Local and long range potentials for heparin‐protein systems for coarse‐grained simulations SA Samsonov, EA Lubecka, KK Bojarski, R Ganzynkowicz, A Liwo Biopolymers 110 (8), e23269, 2019 | 11 | 2019 |
| ESCASA: Analytical estimation of atomic coordinates from coarse‐grained geometry for nuclear‐magnetic‐resonance‐assisted protein structure modeling. I. Backbone and Hβ protons EA Lubecka, A Liwo Journal of Computational Chemistry 42 (22), 1579-1589, 2021 | 9 | 2021 |
| Recent developments in data-assisted modeling of flexible proteins C Czaplewski, Z Gong, EA Lubecka, K Xue, C Tang, A Liwo Frontiers in Molecular Biosciences 8, 765562, 2021 | 8 | 2021 |
| Chauvot de Beauchêne I MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Maigret, B, 1200-1221, 2019 | 8 | 2019 |
