Emilia Lubecka
Emilia Lubecka
Instytut Informatyki, Uniwersytet Gdański
Patvirtintas el. paštas
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
Thermodynamics, size, and dynamics of zwitterionic dodecylphosphocholine and anionic sodium dodecyl sulfate mixed micelles
E Sikorska, D Wyrzykowski, K Szutkowski, K Greber, EA Lubecka, ...
Journal of Thermal Analysis and Calorimetry 123, 511-523, 2016
Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
JE Fajardo, R Shrestha, N Gil, A Belsom, SN Crivelli, C Czaplewski, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1283-1297, 2019
Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment
MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ...
Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023
Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers
A Liwo, C Czaplewski, AK Sieradzan, EA Lubecka, AG Lipska, Ł Golon, ...
Progress in Molecular Biology and Translational Science 170, 73-122, 2020
Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment
EA Lubecka, AS Karczyńska, AG Lipska, AK Sieradzan, K Ziȩba, ...
Journal of Molecular Graphics and Modelling 92, 154-166, 2019
Introduction of a bounded penalty function in contact‐assisted simulations of protein structures to omit false restraints
EA Lubecka, A Liwo
Journal of computational chemistry 40 (25), 2164-2178, 2019
Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment
A Antoniak, I Biskupek, KK Bojarski, C Czaplewski, A Giełdoń, M Kogut, ...
Journal of Molecular Graphics and Modelling 108, 108008, 2021
Modeling the structure, dynamics, and transformations of proteins with the UNRES force field
AK Sieradzan, C Czaplewski, P Krupa, MA Mozolewska, AS Karczyńska, ...
Protein folding: Methods and protocols, 399-416, 2022
Arginine-, d-arginine-vasopressin, and their inverso analogues in micellar and liposomic models of cell membrane: CD, NMR, and molecular dynamics studies
EA Lubecka, E Sikorska, D Sobolewski, A Prahl, J Slaninová, ...
European Biophysics Journal 44, 727-743, 2015
NMR studies of new arginine vasopressin analogs modified with α-2-indanylglycine enantiomers at position 2 bound to sodium dodecyl sulfate micelles
E Lubecka, A Kwiatkowska, J Ciarkowski, E Sikorska
Biophysical chemistry 151 (3), 139-148, 2010
Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
AK Sieradzan, J Sans‐Duñó, EA Lubecka, C Czaplewski, AG Lipska, ...
Journal of computational chemistry 44 (4), 602-625, 2023
Improved consensus-fragment selection in template-assisted prediction of protein structures with the UNRES force field in CASP13
AS Karczyńska, K Ziȩba, U Uciechowska, MA Mozolewska, P Krupa, ...
Journal of Chemical Information and Modeling 60 (3), 1844-1864, 2020
A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. II. Backbone-local potentials of …
EA Lubecka, A Liwo
The Journal of Chemical Physics 147 (11), 2017
Vomocytosis: too much booze, base, or calcium?
M Cruz-Acuña, N Pacifici, JS Lewis
MBio 10 (6), 10.1128/mbio. 02526-19, 2019
Local and long range potentials for heparin‐protein systems for coarse‐grained simulations
SA Samsonov, EA Lubecka, KK Bojarski, R Ganzynkowicz, A Liwo
Biopolymers 110 (8), e23269, 2019
Shielding effect in protein folding
AK Sieradzan, AG Lipska, EA Lubecka
Journal of Molecular Graphics and Modelling 79, 118-132, 2018
Recent developments in data-assisted modeling of flexible proteins
C Czaplewski, Z Gong, EA Lubecka, K Xue, C Tang, A Liwo
Frontiers in Molecular Biosciences 8, 765562, 2021
Conformational studies of neurohypophyseal hormones analogues with glycoconjugates by NMR spectroscopy
EA Lubecka, E Sikorska, A Marcinkowska, J Ciarkowski
Journal of Peptide Science 20 (6), 406-414, 2014
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Straipsniai 1–20