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Zheng Zheng
Zheng Zheng
Professor of Chemistry at Wuhan University of Techonology
Verified email at whut.edu.cn - Homepage
Title
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Cited by
Year
The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions
LA Burns, JC Faver, Z Zheng, MS Marshall, DGA Smith, ...
The Journal of Chemical Physics 147, 161727, 2017
1112017
A cascade reaction network mimicking the basic functional steps of adaptive immune response
HLWT Da Han, Cuichen Wu, Mingxu You, Tao Zhang, Shuo Wan, Tao Chen, Liping ...
Nature Chemistry, 2015
982015
Development of the Knowledge-based & Empirical Combined Scoring Algorithm (KECSA) to Score Protein-Ligand Interactions.
KMM Zheng Zheng
Journal of Chemical Information and Modeling 53 (5), 1073–1083, 2013
672013
Model for the fast estimation of basis set superposition error in biomolecular systems
KMMJ John C Faver, Zheng Zheng
The Journal of Chemical Physics 135 (14), 144110, 2011
412011
Ligand identification scoring algorithm (LISA)
J Zheng Zheng, Kenneth M. Merz
Journal of Chemical Information and Modeling 51 (6), 1296–1306, 2011
402011
DJ-1 interacts with RACK1 and protects neurons from oxidative-stress-induced apoptosis
J Ma, R Wu, Q Zhang, J Wu, J Lou, Z Zheng, J Ding, Z Yuan
Biochemical Journal 462 (3), 489-497, 2014
322014
The movable type method applied to protein–ligand binding
Z Zheng, MN Ucisik, KM Merz
Journal of chemical theory and computation 9 (12), 5526-5538, 2013
30*2013
Bringing Clarity to the Prediction of Protein-Ligand Binding Free Energies via "Blurring"
KMM Melek N Ucisik, Zheng Zheng, John C Faver
Journal of Chemical Theory and Computation 10 (3), 1314-1325, 2014
272014
Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores
KMMJ Mark L Benson, John C Faver, Melek N Ucisik, Danial S Dashti, Zheng Zheng
Journal of computer-aided molecular design 26 (5), 647-659, 2012
252012
The Role of the Active Site Flap in Streptavidin/Biotin Complex Formation
KMM Nupur Bansal, Zheng Zheng, Lin Frank Song, Jun Pei
Journal of the American Chemical Society, 2018
222018
GA; Vanommeslaeghe, K.; MacKerell, AD; Merz, KM; Sherrill, CD The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent …
LA Burns, JC Faver, Z Zheng, MS Marshall, D Smith
J. Chem. Phys 147 (16), 161727, 2017
222017
KECSA-Movable Type Implicit Solvation Model (KMTISM)
Z Zheng, W Ting, L Pengfei, J Kenneth, M. Merz
Journal of Chemical Theory and Computation, 2014
212014
On the fly estimation of host–guest binding free energies using the movable type method: participation in the SAMPL5 blind challenge
N Bansal, Z Zheng, D Cerutti, K Merz
Journal of Computer-Aided Molecular Design, 2016
202016
Detailed potential of mean force studies on host–guest systems from the SAMPL6 challenge
LF Song, N Bansal, Z Zheng, KM Merz
Journal of computer-aided molecular design 32, 1013-1026, 2018
192018
Free Energy-Based Conformational Search Algorithm Using the Movable Type Sampling Method
KMMJ Li-Li Pan, Zheng Zheng, Ting Wang
Journal of Chemical Theory and Computation, 2015
182015
Random forest refinement of pairwise potentials for protein–ligand decoy detection
J Pei, Z Zheng, H Kim, LF Song, S Walworth, MR Merz, KM Merz Jr
Journal of Chemical Information and Modeling 59 (7), 3305-3315, 2019
162019
Statistics-based model for basis set superposition error correction in large biomolecules
KMM John C Faver, Zheng Zheng
Physical Chemistry Chemical Physics 14 (21), 7795-7799, 2012
152012
Generation of pairwise potentials using multidimensional data mining
Z Zheng, J Pei, N Bansal, H Liu, LF Song, KM Merz Jr
Journal of Chemical Theory and Computation 14 (10), 5045-5067, 2018
132018
Random Forest Refinement of the KECSA2 Knowledge-based Scoring Function for Protein Decoy Detection
J Pei, Z Zheng, KM Merz
Journal of Chemical Information and Modeling, 2019
112019
Incorporation of Side Chain Flexibility into Protein Binding Pockets using MTflex
B Nupur, Z Zheng, J Kenneth, M., Merz
Bioorganic & Medicinal Chemistry, 2016
112016
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